Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G178684_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G178684_P01
Family
TRAF
3D structure (top 5)
2IF5 2Z8H 1R29 2PPI 2Q81
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.20179
Arabidopsis thaliana ATBPM1 (BTB-POZ AND MATH DOMAIN 1); protein binding (ATBPM1) mRNA, complete cds /cds=p(297,1520) /gb=NM_121905
At.24125
Arabidopsis thaliana ATBPM2; protein binding (ATBPM2) mRNA, complete cds /cds=p(339,1559) /gb=NM_111494
At.37134
Arabidopsis thaliana ATBPM3; protein binding (ATBPM3) mRNA, complete cds /cds=p(141,1367) /gb=NM_129534
Hv.11353
HVSMEh0092O12f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone HVSMEh0092O12f, mRNA sequence /clone=HVSMEh0092O12f /gb=BE196657
Os.11898
Oryza sativa Japonica Group cDNA clone:J033024L05, full insert sequence /cds=p(269,1573) /gb=AK073258
Os.6208
Oryza sativa Japonica Group cDNA clone:J023031F07, full insert sequence /cds=p(241,1428) /gb=AK069837
Ppa.2468
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_143618) mRNA, complete cds /cds=p(1,1191) /gb=XM_001776357
Ppa.4132
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_226178) mRNA, complete cds /cds=p(344,1549) /gb=XM_001782953
Ppa.666
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_217835) mRNA, complete cds /cds=p(380,1588) /gb=XM_001772196
Pth.14531
WS02515.B21_N04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02515_N04 3', mRNA sequence /clone=WS02515_N04 /clone_end=3' /gb=CV242709
Pth.5986
WS02546.C21.1_L04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02546_L04 3', mRNA sequence /clone=WS02546_L04 /clone_end=3' /gb=DT491059
Sbi.14505
NIT1_29_C04.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_29_C04_A002 5', mRNA sequence /clone=NIT1_29_C04_A002 /clone_end=5' /gb=CF434310 /gi=34447011
Vvi.531
VV_PEa24b03.g1 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence /gb=EV231961

Domain Architecture

BTB PF00651 GRMZM2G178684_P01
DomainStartEndBit scoreE-value
BTB7018999.21.4e-26

Sequences