Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G179802_P02

Identification

Species:
Zea mays
Gene model
GRMZM2G179802_P02
Family
HSF
3D structure (top 5)
1HKS 3HTS 1C1G
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

493513 Score: 1

Zea mays

GRMZM2G179802_P01 Score: 1
GRMZM2G179802_P02 Score: 1

Arabidopsis thaliana

AT4G13980.1 Score: 1

Zea mays

GRMZM2G179802_P02 Score: 1
GRMZM2G179802_P01 Score: 0.91

Carica papaya

evm.TU.supercontig_157.43 Score: 1

Zea mays

GRMZM2G179802_P01 Score: 1
GRMZM2G179802_P02 Score: 0.998

Zea mays

GRMZM2G179802_P01 Score: 1
GRMZM2G179802_P02 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g29340.1 Score: 1

Populus trichocarpa

597074 Score: 1

Zea mays

GRMZM2G179802_P01 Score: 1
GRMZM2G179802_P02 Score: 0.998

Sorghum bicolor

4756324 Score: 1

Zea mays

GRMZM2G179802_P01 Score: 1
GRMZM2G179802_P02 Score: 0.992

Expression data

Expressed Sequence Tags

At.5364
Arabidopsis thaliana HSF3 (HEAT SHOCK FACTOR 3); DNA binding / transcription factor (HSF3) mRNA, complete cds /cds=p(117,1562) /gb=NM_180501
At.5971
Arabidopsis thaliana ATHSFA1E (Arabidopsis thaliana heat shock transcription factor A1E); DNA binding / transcription factor (ATHSFA1E) mRNA, complete cds /cds=p(143,1549) /gb=NM_111169
Hv.18901
HVSMEb0008B10f Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEb0008B10f, mRNA sequence /clone=HVSMEb0008B10f /gb=BF628773
Os.18587
Oryza sativa Japonica Group cDNA clone:J033067M16, full insert sequence /gb=AK101824
Os.2152
Oryza sativa Japonica Group cDNA clone:002-148-G05, full insert sequence /cds=p(181,1503) /gb=AK109856
Os.40018
Oryza sativa spl7 mRNA for spl7 protein, complete cds /cds=p(358,1737) /gb=AB050098
Os.59230
Oryza sativa Japonica Group cDNA clone:J013165J23, full insert sequence /gb=AK072210
Os.9717
Oryza sativa Japonica Group cDNA clone:J023088F14, full insert sequence /cds=p(126,1646) /gb=AK100430
Pth.11766
F069P67Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence /gb=BI136536
Sbi.13340
WS1_6_F12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence /gb=AW680707
Vvi.23635
S9B09290 Ripening Berries (VvS9) Vitis vinifera cDNA clone S9B09290, mRNA sequence /clone=S9B09290 /gb=EE101448

Domain Architecture

HSF_DNA-bind PF00447 GRMZM2G179802_P02
DomainStartEndBit scoreE-value
HSF_DNA-bind66233198.71.6e-56

Sequences