Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00001485001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00001485001
Family
MYB-related
3D structure (top 5)
1HST 1UHM 1USS 1UST 1GHC
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

474123 Score: 1

Arabidopsis thaliana

AT1G49950.1 Score: 1
AT1G49950.2 Score: 1
AT1G49950.3 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g41920.1 Score: 1
LOC_Os12g41920.2 Score: 1
LOC_Os12g41920.3 Score: 1

Populus trichocarpa

557527 Score: 1

Sorghum bicolor

4868619 Score: 1

Selaginella moellendorffii

413266 Score: 1

Zea mays

GRMZM2G095239_P01 Score: 1

Expression data

Expressed Sequence Tags

At.26646
Arabidopsis thaliana telomere repeat binding factor 3 (TRB3) mRNA, complete cds /cds=p(221,1108) /gb=U83839
At.27250
Arabidopsis thaliana ATTRB1/TRB1 (TELOMERE REPEAT BINDING FACTOR 1); DNA binding (ATTRB1/TRB1) mRNA, complete cds /cds=p(304,1206) /gb=NM_202269
At.7636
Arabidopsis thaliana ATTRB2/TRB2 (TELOMERE REPEAT BINDING FACTOR 2); DNA binding / transcription factor (ATTRB2/TRB2) mRNA, complete cds /cds=p(255,1154) /gb=NM_180955
Hv.2421
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf43k23, mRNA sequence /gb=AK249564
Mtr.17478
METB235TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY477379
Mtr.7648
META350TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474260
Os.27252
Oryza sativa Japonica Group cDNA clone:001-200-G11, full insert sequence /gb=AK105660
Os.8369
Oryza sativa Japonica Group cDNA clone:J033117F01, full insert sequence /gb=AK103040
Pth.15014
WS0254.B21_M03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0254_M03 3', mRNA sequence /clone=WS0254_M03 /clone_end=3' /gb=CV244470
Sbi.9613
WOUND1_39_E08.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_39_E08_A002 5', mRNA sequence /clone=WOUND1_39_E08_A002 /clone_end=5' /gb=CN146348 /gi=45986221
Vvi.8843
WIN0517.C21_L21 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0517_L21 3', mRNA sequence /clone=WIN0517_L21 /clone_end=3' /gb=EC939798

Domain Architecture

Myb_DNA-binding PF00249 GSVIVP00001485001
DomainStartEndBit scoreE-value
Myb_DNA-binding55737.84.3e-08
Linker_histone12018833.33.7e-07

Sequences