Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00002142001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00002142001
Family
NAC
3D structure (top 5)
1UT7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

895868 Score: 1

Arabidopsis thaliana

AT1G79580.1 Score: 1
AT1G79580.2 Score: 1
AT1G79580.3 Score: 1

Carica papaya

evm.TU.supercontig_118.24 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g33940.1 Score: 1

Physcomitrella patens

128437 Score: 1

Populus trichocarpa

567139 Score: 1

Sorghum bicolor

5061772 Score: 1

Selaginella moellendorffii

74950 Score: 1

Zea mays

GRMZM2G104074_P01 Score: 1

Expression data

Expressed Sequence Tags

At.33635
Arabidopsis thaliana ANAC070 (Arabidopsis NAC domain containing protein 70); transcription factor (ANAC070) mRNA, complete cds /cds=p(1,1026) /gb=NM_117103
At.34210
Arabidopsis thaliana NST2 (NAC SECONDARY WALL THICKENING PROMOTING FACTOR2); transcription factor (NST2) mRNA, complete cds /cds=p(36,1040) /gb=NM_116056
At.35148
Arabidopsis thaliana clone 151034 mRNA, complete sequence /cds=p(66,1040) /gb=AY085424
At.50052
Arabidopsis thaliana ANAC033; transcription factor (ANAC033) mRNA, complete cds /cds=p(295,1410) /gb=NM_106606
At.50400
Arabidopsis thaliana ANAC076/VND2 (VASCULAR-RELATED NAC-DOMAIN 2); transcription factor (ANAC076/VND2) mRNA, complete cds /cds=p(202,1335) /gb=NM_119783
At.52328
Arabidopsis thaliana VND5 (VASCULAR RELATED NAC-DOMAIN PROTEIN 5); transcription factor (VND5) mRNA, complete cds /cds=p(1,1185) /gb=NM_104947
Hv.27222
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf17a09, mRNA sequence /gb=AK249120
Os.10581
Oryza sativa Japonica Group cDNA clone:002-148-G11, full insert sequence /gb=AK109860
Os.4386
Oryza sativa Japonica Group cDNA clone:J033087M22, full insert sequence /cds=p(1150,1809) /gb=AK102224
Os.50054
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245A08, full insert sequence /gb=CT833125
Os.51831
Oryza sativa Japonica Group cDNA clone:001-123-E07, full insert sequence /cds=p(246,1325) /gb=AK063943
Os.56173
Oryza sativa Japonica Group cDNA clone:002-124-A06, full insert sequence /cds=p(663,1241) /gb=AK109552
Os.61149
Oryza sativa Japonica Group cDNA clone:002-101-D07, full insert sequence /cds=p(155,1180) /gb=AK106313
Os.62399
Oryza sativa (japonica cultivar-group) Os03g0127200 (Os03g0127200) mRNA, complete cds /cds=p(1,1101) /gb=NM_001055366
Pth.12425
Populus trichocarpa clone WS0117_G20 unknown mRNA /cds=p(179,1447) /gb=EF146350

Domain Architecture

NAM PF02365 GSVIVP00002142001
DomainStartEndBit scoreE-value
NAM10140295.98.5e-86

Sequences