Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00002226001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00002226001
Family
Jumonji
3D structure (top 5)
2OX0 2W2I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

334149 Score: 1

Arabidopsis thaliana

AT1G08620.1 Score: 1

Carica papaya

evm.TU.supercontig_162.51 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g10770.1 Score: 1

Populus trichocarpa

241426 Score: 1

Sorghum bicolor

4897240 Score: 1

Selaginella moellendorffii

170257 Score: 1

Zea mays

GRMZM2G061170_P01 Score: 1
GRMZM2G107109_P02 Score: 0.996

Expression data

Expressed Sequence Tags

At.26858
Arabidopsis thaliana transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (AT1G08620) mRNA, complete cds /cds=p(1,3552) /gb=NM_100735
At.27326
Arabidopsis thaliana transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (AT1G30810) mRNA, complete cds /cds=p(323,2686) /gb=NM_102818
At.43482
Arabidopsis thaliana transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (AT4G20400) mRNA, complete cds /cds=p(201,3065) /gb=NM_118159
At.53035
Arabidopsis thaliana MEE27 (maternal effect embryo arrest 27); transcription factor (MEE27) mRNA, complete cds /cds=p(1,2421) /gb=NM_129041
Hv.16169
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf124d14, mRNA sequence /gb=AK253132
Pth.16132
F057P19.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F057P19 3', mRNA sequence /clone=F057P19 /clone_end=3' /gb=CK091187
Sbi.8331
RHOH1_36_H01.b3_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_36_H01_A002 3', mRNA sequence /clone=RHOH1_36_H01_A002 /clone_end=3' /gb=CN129603 /gi=45957447
Vvi.9054
VV_PEd19g09.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV243159

Domain Architecture

JmjC PF02373 GSVIVP00002226001
DomainStartEndBit scoreE-value
JmjC1522682351.9e-67
zf-C5HC2371424914.1e-24
FYRN740792561.4e-13
FYRC795890100.84.7e-27

Sequences