Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00002586001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00002586001
Family
SNF2
3D structure (top 5)
3DMQ 2FWR 1Z3I 1Z5Z 1Z63
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

474167 Score: 1

Arabidopsis thaliana

AT1G50410.1 Score: 1

Micromonas sp. RCC299

56440 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g08220.1 Score: 1
LOC_Os08g08220.2 Score: 1

Populus trichocarpa

764977 Score: 1

Zea mays

GRMZM2G149157_P02 Score: 1

Expression data

Expressed Sequence Tags

At.15795
Arabidopsis thaliana putative DNA-binding protein (At1g50410) mRNA, complete cds /cds=p(190,3135) /gb=AY039939
At.36526
Arabidopsis thaliana EDA16 (embryo sac development arrest 16) (EDA16) mRNA, complete cds /cds=p(742,4110) /gb=NM_001124053
At.43523
Arabidopsis thaliana SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein (AT3G20010) mRNA, complete cds /cds=p(1,3144) /gb=NM_112891
At.71074
Arabidopsis thaliana SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (AT1G11100) mRNA, complete cds /cds=p(1,3681) /gb=NM_100983
Os.15825
Oryza sativa Japonica Group cDNA clone:J033089H07, full insert sequence /cds=p(326,3481) /gb=AK102284
Os.17162
Oryza sativa Japonica Group cDNA clone:J013119B08, full insert sequence /gb=AK072085
Os.33780
Oryza sativa Japonica Group cDNA clone:J023054E15, full insert sequence /gb=AK070470
Pba.8360
WS02526.BR_K04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_K04 5', mRNA sequence /clone=WS02526_K04 /clone_end=5' /gb=DT479679
Ppa.15038
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_112295) mRNA, partial cds /cds=p(1,2190) /gb=XM_001752316
Pth.8360
WS02526.BR_K04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_K04 5', mRNA sequence /clone=WS02526_K04 /clone_end=5' /gb=DT479679

Domain Architecture

SNF2_N PF00176 GSVIVP00002586001
DomainStartEndBit scoreE-value
SNF2_N173494196.66.8e-56
zf-C3HC453157132.12.3e-06
Helicase_C67375074.53.8e-19

Sequences