Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00002934001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00002934001
Family
MYB-related
3D structure (top 5)
2DCE 2FQ3 2COM 2YUS 2Z3Y
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

902435 Score: 1

Arabidopsis thaliana

AT2G33610.1 Score: 1

Carica papaya

evm.TU.supercontig_26.13 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g10060.1 Score: 1

Populus trichocarpa

410826 Score: 1

Sorghum bicolor

5003736 Score: 1

Zea mays

GRMZM2G064328_P01 Score: 1
GRMZM2G105840_P01 Score: 1

Expression data

Expressed Sequence Tags

At.43725
Arabidopsis thaliana ATSWI3B (Arabidopsis thaliana switching protein 3B); DNA binding (ATSWI3B) mRNA, complete cds /cds=p(52,1461) /gb=NM_128921
Hv.5363
HD08D03r HD Hordeum vulgare cDNA clone HD08D03 5-PRIME, mRNA sequence /clone=HD08D03 /clone_end=5' /gb=BU991876
Sbi.6440
RHOH1_31_E02.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_31_E02_A002 5', mRNA sequence /clone=RHOH1_31_E02_A002 /clone_end=5' /gb=CN128802 /gi=45956004
Vvi.17378
WIN052.C21_H04 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN052_H04 3', mRNA sequence /clone=WIN052_H04 /clone_end=3' /gb=EC934819

Domain Architecture

SWIRM PF04433 GSVIVP00002934001
DomainStartEndBit scoreE-value
SWIRM58146126.49e-35
Myb_DNA-binding23227738.52.8e-08

Sequences