Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00005429001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00005429001
Family
NAC
3D structure (top 5)
1UT7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

336483 Score: 1

Arabidopsis thaliana

AT1G34190.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os09g32040.1 Score: 1

Populus trichocarpa

714847 Score: 1

Sorghum bicolor

5051393 Score: 1

Zea mays

GRMZM2G033742_P01 Score: 1

Expression data

Expressed Sequence Tags

At.21933
Arabidopsis thaliana ANAC053 (Arabidopsis NAC domain containing protein 53); transcription factor (ANAC053) mRNA, complete cds /cds=p(229,1878) /gb=NM_111885
At.22852
Arabidopsis thaliana NAC2 (Arabidopsis NAC domain containing protein 78); transcription factor (NAC2) mRNA, complete cds /cds=p(223,1926) /gb=NM_120523
At.48014
Arabidopsis thaliana ANAC082 (Arabidopsis NAC domain containing protein 82) (ANAC082) mRNA, complete cds /cds=p(470,1939) /gb=NM_001085082
Hv.23644
Hordeum vulgare subsp. vulgare mRNA for transcription factor, complete cds /cds=p(11,1306) /gb=AB362161
Hv.5295
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf28m08, mRNA sequence /gb=AK249396
Mtr.12198
EST611135 KVKC Medicago truncatula cDNA clone pKVKC-7D7, mRNA sequence /clone=pKVKC-7D7 /gb=BQ165266
Mtr.6492
Medicago truncatula NAC1 (NAC1) mRNA, complete cds /cds=p(186,1415) /gb=AF254124
Os.12020
Oryza sativa Japonica Group cDNA clone:J013032G17, full insert sequence /cds=p(759,2108) /gb=AK099540
Os.83155
Oryza sativa Japonica Group RIM1 mRNA for NAC protein, complete cds /cds=p(1,1953) /gb=AB265821
Os.87866
Oryza sativa Japonica Group cDNA clone:J013112C23, full insert sequence /cds=p(89,2197) /gb=AK099237
Os.93257
Oryza sativa Japonica Group cDNA clone:J013131L02, full insert sequence /gb=AK068153
Ppa.19514
CBAW1464.fwd CBAW Physcomitrella patens subsp. patens Gransden - dessicated (H) Physcomitrella patens subsp. patens cDNA clone CBAW1464 5', mRNA sequence /clone=CBAW1464 /clone_end=5' /gb=FC431164
Sbi.17975
OX1_38_A01.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_38_A01_A002 5', mRNA sequence /clone=OX1_38_A01_A002 /clone_end=5' /gb=CN135689 /gi=45968055
Vvi.11133
SCB06674 Inflorescence with GA3 (VvS12) Vitis vinifera cDNA clone SCB06674, mRNA sequence /clone=SCB06674 /gb=EE108760
Vvi.22179
WIN0541.C21_G04 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0541_G04 3', mRNA sequence /clone=WIN0541_G04 /clone_end=3' /gb=EC947344
Vvi.22224
WIN052.C21_E13 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN052_E13 3', mRNA sequence /clone=WIN052_E13 /clone_end=3' /gb=EC934765

Domain Architecture

NAM PF02365 GSVIVP00005429001
DomainStartEndBit scoreE-value
NAM201482643.4e-76

Sequences