Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00006008001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00006008001
Family
SNF2
3D structure (top 5)
1Z3I 1Z5Z 1Z63 1WP9 3DMQ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

496587 Score: 1

Arabidopsis thaliana

AT5G63950.1 Score: 1

Chlorella sp. NC64A

49470 Score: 1

Ostreococcus lucimarinus

10033 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g59624.2 Score: 1

Physcomitrella patens

71851 Score: 1

Populus trichocarpa

562497 Score: 1

Sorghum bicolor

5042814 Score: 1

Selaginella moellendorffii

50459 Score: 1

Zea mays

GRMZM2G138125_P01 Score: 1

Expression data

Expressed Sequence Tags

At.28262
Arabidopsis thaliana AT5g63950/MBM17_5 mRNA, complete cds /cds=p(101,3373) /gb=AF462829
Os.61568
Oryza sativa (japonica cultivar-group) Os04g0692700 (Os04g0692700) mRNA, complete cds /cds=p(1,4905) /gb=NM_001060906
Vvi.9506
WIN0210.TB24.1_N10 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN0210_N10 3', mRNA sequence /clone=WIN0210_N10 /clone_end=3' /gb=EC926022

Domain Architecture

SNF2_N PF00176 GSVIVP00006008001
DomainStartEndBit scoreE-value
SNF2_N284583221.52.2e-63
Helicase_C667745908.6e-24

Sequences