Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00006496001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00006496001
Family
Sigma70-like
3D structure (top 5)
1SIG 1L0O 1L9Z 2A6H 1RP3
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

489269 Score: 1

Arabidopsis thaliana

AT5G24120.1 Score: 1

Carica papaya

evm.TU.supercontig_3.55 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g50930.1 Score: 1

Physcomitrella patens

230140 Score: 1

Populus trichocarpa

591382 Score: 1

Sorghum bicolor

5010228 Score: 1

Selaginella moellendorffii

53596 Score: 1

Zea mays

GRMZM2G077436_P01 Score: 1

Expression data

Expressed Sequence Tags

At.5425
Arabidopsis thaliana SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor (SIGE) mRNA, complete cds /cds=p(108,1661) /gb=NM_122317
Hv.13889
BJ484953 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah56o16 3', mRNA sequence /clone=bah56o16 /clone_end=3' /gb=BJ484953
Mtr.13499
EST1226120 MTY Medicago truncatula cDNA clone MTYAQ22, mRNA sequence /clone=MTYAQ22 /gb=DW017159
Os.57417
Oryza sativa Japonica Group cDNA clone:001-201-C12, full insert sequence /gb=AK105697
Vvi.2394
CA32EN0005_IbF_D10 Cabernet Sauvignon Leaf - CA32EN Vitis vinifera cDNA clone CA32EN0005_IbF_D10 5', mRNA sequence /clone=CA32EN0005_IbF_D10 /clone_end=5' /gb=CB343822

Domain Architecture

Sigma70_r2 PF04542 GSVIVP00006496001
DomainStartEndBit scoreE-value
Sigma70_r228435744.25e-10
Sigma70_r336144148.13.4e-11
Sigma70_r445350674.15e-19

Sequences