Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00007276001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00007276001
Family
MYB
3D structure (top 5)
2K9N 1GV2 1H89 1H8A 2DIM
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

327351 Score: 1

Arabidopsis thaliana

AT4G22680.1 Score: 1

Carica papaya

evm.TU.supercontig_3.301 Score: 1

Oryza sativa subsp. japonica

LOC_Os09g36250.1 Score: 1

Populus trichocarpa

413758 Score: 1

Sorghum bicolor

4875300 Score: 1

Zea mays

GRMZM2G104551_P01 Score: 1
GRMZM2G104551_P02 Score: 1
GRMZM2G104551_P03 Score: 0.933

Expression data

Expressed Sequence Tags

At.10901
Arabidopsis thaliana MYB20 (myb domain protein 20); DNA binding / transcription factor (MYB20) mRNA, complete cds /cds=p(169,1017) /gb=NM_105294
At.10905
Arabidopsis thaliana AtMYB40 (myb domain protein 40); DNA binding / transcription factor (AtMYB40) mRNA, complete cds /cds=p(1,792) /gb=NM_121438
At.1863
Arabidopsis thaliana MYB85 (myb domain protein 85); DNA binding / transcription factor (MYB85) mRNA, complete cds /cds=p(137,937) /gb=NM_118394
At.2261
Arabidopsis thaliana ATM4/ATMYB102 (ARABIDOPSIS MYB-LIKE 102); DNA binding / transcription factor (ATM4/ATMYB102) mRNA, complete cds /cds=p(109,1161) /gb=NM_118264
At.2669
Arabidopsis thaliana AtMYB41 (myb domain protein 41); DNA binding / transcription factor (AtMYB41) mRNA, complete cds /cds=p(1,849) /gb=NM_118951
At.3609
03-L022342-065-009-C01-SeLA MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 009-C01, mRNA sequence /clone=009-C01 /gb=DR751488
At.5394
Arabidopsis thaliana AtMIXTA/AtMYB16 (myb domain protein 16); DNA binding / transcription factor (AtMIXTA/AtMYB16) mRNA, complete cds /cds=p(224,1204) /gb=NM_121535
At.8938
Arabidopsis thaliana mRNA for MYB99, complete cds, clone: RAFL22-21-A14 /cds=p(148,885) /gb=AK175687
At.974
Arabidopsis thaliana AtMYB17 (myb domain protein 17); DNA binding / transcription factor (AtMYB17) mRNA, complete cds /cds=p(305,1204) /gb=NM_115989
At.9932
Arabidopsis thaliana AtMYB9 (myb domain protein 9); DNA binding (AtMYB9) mRNA, complete cds /cds=p(326,1336) /gb=NM_203063
Hv.26842
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97l09, mRNA sequence /gb=AK248579
Mtr.17289
NF014F01EC1F1013 Elicited cell culture Medicago truncatula cDNA clone NF014F01EC 5', mRNA sequence /clone=NF014F01EC /clone_end=5' /gb=BF647065
Os.21636
Oryza sativa Japonica Group cDNA clone:J023049M10, full insert sequence /gb=AK121023
Os.3390
O.sativa mRNA for myb factor, 1355 bp /cds=p(116,1222) /gb=Y11415
Os.3391
O.sativa mRNA for myb factor, 1402 bp /cds=p(147,986) /gb=Y11351
Os.55096
Oryza sativa Japonica Group cDNA clone:002-129-C06, full insert sequence /gb=AK107483
Os.7051
Oryza sativa Japonica Group cDNA clone:002-150-A10, full insert sequence /gb=AK108709
Ppa.49
P.patens mRNA Pp2 /cds=p(134,1399) /gb=X67050
Ppa.4948
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_184923) mRNA, complete cds /cds=p(196,1461) /gb=XM_001765651
Ptp.6319
UL88TH12.5pR Populus cold stressed leaves cDNA library Populus tremula x Populus tremuloides cDNA clone UL88TH12 5', mRNA sequence /clone=UL88TH12 /clone_end=5' /gb=DN500804

Domain Architecture

Myb_DNA-binding PF00249 GSVIVP00007276001
DomainStartEndBit scoreE-value
Myb_DNA-binding146146.98.1e-11
Myb_DNA-binding6711245.32.3e-10

Sequences

protein sequence
transcript sequence