Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00009957001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00009957001
Family
MYB-related
3D structure (top 5)
2AQE 2ELJ 2CUJ 2E5R 2ELK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

493242 Score: 1

Arabidopsis thaliana

AT4G16420.1 Score: 1
AT4G16420.3 Score: 0.982
AT4G16420.2 Score: 0.964

Cyanidioschyzon merolae

CMP134C Score: 1

Carica papaya

evm.TU.supercontig_27.257 Score: 1

Chlamydomonas reinhardtii

290570 Score: 1

Coccomyxa sp. C-169

15201 Score: 1

Ostreococcus lucimarinus

51202 Score: 1.01
2829 Score: 1

Vitis vinifera

GSVIVP00009957001 Score: 1
GSVIVP00029107001 Score: 1

Expression data

Expressed Sequence Tags

At.18344
Arabidopsis thaliana ADA2A (Arabidopsis adaptor 2A homolog); DNA binding / transcription factor (ADA2A) mRNA, complete cds /cds=p(333,1766) /gb=NM_202522
At.4412
Arabidopsis thaliana ADA2B (PROPORZ1); DNA binding / transcription factor (ADA2B) mRNA, complete cds /cds=p(312,1775) /gb=NM_117737
Os.59266
Oryza sativa Japonica Group cDNA clone:J023128E10, full insert sequence /cds=p(258,1961) /gb=AK072597
Pba.9973
WS01919.C21_N13 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01919_N13 3', mRNA sequence /clone=WS01919_N13 /clone_end=3' /gb=DT470090
Pth.11830
F099P79.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F099P79 3', mRNA sequence /clone=F099P79 /clone_end=3' /gb=CK091432
Pth.9973
WS01919.C21_N13 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01919_N13 3', mRNA sequence /clone=WS01919_N13 /clone_end=3' /gb=DT470090
Sbi.8578
RHOH1_44_H08.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_44_H08_A002 5', mRNA sequence /clone=RHOH1_44_H08_A002 /clone_end=5' /gb=CN130944 /gi=45959951
Vvi.12822
WIN1138.C21_N05 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1138_N05 3', mRNA sequence /clone=WIN1138_N05 /clone_end=3' /gb=EC990184

Domain Architecture

ZZ PF00569 GSVIVP00009957001
DomainStartEndBit scoreE-value
ZZ14028.82.3e-05
Myb_DNA-binding5610246.41.1e-10
SWIRM39748333.11.1e-06

Sequences