Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00013475001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00013475001
Family
MYB-related
3D structure (top 5)
1IRZ 2ELK 2ROH 2CU7 1OFC
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Vitis vinifera

GSVIVP00012218001 Score: 1
GSVIVP00013475001 Score: 0.906

Oryza sativa subsp. japonica

LOC_Os10g41200.1 Score: 1

Physcomitrella patens

78294 Score: 1

Vitis vinifera

GSVIVP00012218001 Score: 1
GSVIVP00013475001 Score: 0.928

Sorghum bicolor

141760 Score: 1

Vitis vinifera

GSVIVP00012218001 Score: 1
GSVIVP00013475001 Score: 0.909

Zea mays

GRMZM2G084950_P01 Score: 1
GRMZM2G034110_P01 Score: 0.995

Vitis vinifera

GSVIVP00012218001 Score: 1
GSVIVP00013475001 Score: 0.91

Expression data

Expressed Sequence Tags

At.23392
Arabidopsis thaliana myb family transcription factor (AT5G47390) mRNA, complete cds /cds=p(212,1309) /gb=NM_124110
At.35354
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-29-L19 /cds=p(63,848) /gb=AK227711
Hv.6265
Hordeum vulgare mRNA for MYBSt1 protein /cds=p(1,945) /gb=AJ965496
Mtr.13735
MTYEC89TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV260876
Mtr.14074
EST1226559 MTY Medicago truncatula cDNA clone MTYAV63, mRNA sequence /clone=MTYAV63 /gb=DW017598
Mtr.3679
EST1224491 MTY Medicago truncatula cDNA clone MTYA640, mRNA sequence /clone=MTYA640 /gb=DW015530
Pba.11263
WS02537.B21_A21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_A21 3', mRNA sequence /clone=WS02537_A21 /clone_end=3' /gb=DT488657
Pba.11301
WS02523.B21_D17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_D17 3', mRNA sequence /clone=WS02523_D17 /clone_end=3' /gb=DT483664
Pth.10577
Populus trichocarpa clone WS01230_F05 unknown mRNA /cds=p(116,1054) /gb=EF147391
Pth.11263
WS02537.B21_A21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_A21 3', mRNA sequence /clone=WS02537_A21 /clone_end=3' /gb=DT488657
Pth.11301
WS02523.B21_D17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_D17 3', mRNA sequence /clone=WS02523_D17 /clone_end=3' /gb=DT483664
Ptp.1251
G121P52.3pR Populus tension wood cDNA library Populus tremula x Populus tremuloides cDNA clone G121P52 3', mRNA sequence /clone=G121P52 /clone_end=3' /gb=CK093477
Sbi.10737
ABA1_30_C02.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor cDNA clone ABA1_30_C02_A012 5', mRNA sequence /clone=ABA1_30_C02_A012 /clone_end=5' /gb=CB925970 /gi=30162241
Vvi.1267
VV_PEd0010c02.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV239979
Vvi.8774
CAST0001_IF_A06 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0001_IF_A06 5', mRNA sequence /clone=CAST0001_IF_A06 /clone_end=5' /gb=CF214804

Domain Architecture

Myb_DNA-binding PF00249 GSVIVP00013475001
DomainStartEndBit scoreE-value
Myb_DNA-binding9814537.64.9e-08

Sequences