Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00013670001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00013670001
Family
SNF2
3D structure (top 5)
1Z63 1WP9 2FWR 1Z3I 3DMQ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

475211 Score: 1

Arabidopsis thaliana

AT1G11100.1 Score: 1

Vitis vinifera

GSVIVP00013670001 Score: 1.008
GSVIVP00004267001 Score: 1

Cyanidioschyzon merolae

CMI119C Score: 1

Carica papaya

evm.TU.supercontig_27.89 Score: 1

Coccomyxa sp. C-169

70968 Score: 1

Vitis vinifera

GSVIVP00013670001 Score: 1.005
GSVIVP00004267001 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g57110.1 Score: 1
LOC_Os01g57110.2 Score: 0.973

Physcomitrella patens

189373 Score: 1

Vitis vinifera

GSVIVP00013670001 Score: 1.006
GSVIVP00004267001 Score: 1

Populus trichocarpa

234045 Score: 1

Vitis vinifera

GSVIVP00013670001 Score: 1.017
GSVIVP00004267001 Score: 1
GSVIVP00010086001 Score: 1

Sorghum bicolor

5053814 Score: 1

Vitis vinifera

GSVIVP00013670001 Score: 1.009
GSVIVP00004267001 Score: 1

Selaginella moellendorffii

429547 Score: 1

Vitis vinifera

GSVIVP00013670001 Score: 1.01
GSVIVP00004267001 Score: 1
GSVIVP00010086001 Score: 1

Expression data

Expressed Sequence Tags

At.15795
Arabidopsis thaliana putative DNA-binding protein (At1g50410) mRNA, complete cds /cds=p(190,3135) /gb=AY039939
At.43523
Arabidopsis thaliana SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein (AT3G20010) mRNA, complete cds /cds=p(1,3144) /gb=NM_112891
At.71074
Arabidopsis thaliana SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (AT1G11100) mRNA, complete cds /cds=p(1,3681) /gb=NM_100983
Os.15825
Oryza sativa Japonica Group cDNA clone:J033089H07, full insert sequence /cds=p(326,3481) /gb=AK102284
Os.17162
Oryza sativa Japonica Group cDNA clone:J013119B08, full insert sequence /gb=AK072085
Os.33780
Oryza sativa Japonica Group cDNA clone:J023054E15, full insert sequence /gb=AK070470
Ppa.15038
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_112295) mRNA, partial cds /cds=p(1,2190) /gb=XM_001752316
Vvi.16419
CAbud0007_IIR_E09 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0007_IIR_E09 3', mRNA sequence /clone=CAbud0007_IIR_E09 /clone_end=3' /gb=CF513767
Vvi.23513
S1G07975 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G07975, mRNA sequence /clone=S1G07975 /gb=EE077143

Domain Architecture

SNF2_N PF00176 GSVIVP00013670001
DomainStartEndBit scoreE-value
SNF2_N342636176.38.8e-50
zf-C3HC467471417.40.001
Helicase_C81889676.68.8e-20

Sequences