Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00015425001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00015425001
Family
MYB-related
3D structure (top 5)
2FQ3 2DCE 2COM 2YUS 2YUM
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

472410 Score: 1

Arabidopsis thaliana

AT1G21700.1 Score: 1

Micromonas sp. RCC299

104814 Score: 1
112657 Score: 1

Ostreococcus lucimarinus

88885 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g08080.1 Score: 1

Physcomitrella patens

163618 Score: 1

Populus trichocarpa

559267 Score: 1

Sorghum bicolor

4822356 Score: 1

Selaginella moellendorffii

63207 Score: 1

Zea mays

GRMZM2G139760_P01 Score: 1
GRMZM2G139760_P04 Score: 1
GRMZM2G139760_P02 Score: 0.987

Expression data

Expressed Sequence Tags

At.41645
Arabidopsis thaliana putative transcriptional regulatory protein (At1g21700) mRNA, complete cds /cds=p(160,2583) /gb=AY091026
Hv.29353
HU02H10r HU Hordeum vulgare subsp. vulgare cDNA clone HU02H10 5-PRIME, mRNA sequence /clone=HU02H10 /clone_end=5' /gb=BQ465032
Os.72816
Oryza sativa Japonica Group cDNA clone:J013089J18, full insert sequence /cds=p(139,2493) /gb=AK066941
Os.9655
Oryza sativa (japonica cultivar-group) Os12g0176700 (Os12g0176700) mRNA, complete cds /cds=p(1,1809) /gb=NM_001072830
Pba.825
WS02519.BR_L21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_L21 5', mRNA sequence /clone=WS02519_L21 /clone_end=5' /gb=DT477364
Pth.825
WS02519.BR_L21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_L21 5', mRNA sequence /clone=WS02519_L21 /clone_end=5' /gb=DT477364
Sbi.11568
LG1_313_G01.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW565021
Vvi.1002
S2B11008 Buds (VvS2) Vitis vinifera cDNA clone S2B11008, mRNA sequence /clone=S2B11008 /gb=EE077908

Domain Architecture

SWIRM PF04433 GSVIVP00015425001
DomainStartEndBit scoreE-value
SWIRM11120088.62.2e-23
Myb_DNA-binding335380422.4e-09

Sequences