Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00015901001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00015901001
Family
C2H2
3D structure (top 5)
2OX0 2W2I 1TF6 2I13 2DLQ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

906087 Score: 1

Arabidopsis thaliana

AT3G48430.1 Score: 1

Carica papaya

evm.TU.supercontig_4.50 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g67970.1 Score: 1

Sorghum bicolor

4796570 Score: 1

Zea mays

GRMZM2G034853_P01 Score: 1

Expression data

Expressed Sequence Tags

At.3169
Arabidopsis thaliana REF6 (RELATIVE OF EARLY FLOWERING 6); transcription factor (REF6) mRNA, complete cds /cds=p(1,4083) /gb=NM_148863
Os.48706
Oryza sativa (japonica cultivar-group) Os12g0279100 (Os12g0279100) mRNA, complete cds /cds=p(164,4264) /gb=NM_001073104
Os.52727
Oryza sativa Japonica Group cDNA clone:J023001N18, full insert sequence /gb=AK068952
Ppa.20331
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_167193) mRNA, complete cds /cds=p(1,6099) /gb=XM_001771491
Pth.12495
UM58TD12.3pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM58TD12 3', mRNA sequence /clone=UM58TD12 /clone_end=3' /gb=DN491069

Domain Architecture

JmjN PF02375 GSVIVP00015901001
DomainStartEndBit scoreE-value
JmjN255867.84.2e-17
JmjC224344176.29.3e-50
zf-C2H21168119318.30.032
zf-C2H21221124520.80.0056
zf-C2H21251127722.80.0014

Sequences