Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00016259001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00016259001
Family
SNF2
3D structure (top 5)
1Z63 1WP9 2FWR 3DMQ 1Z3I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

908729 Score: 1

Arabidopsis thaliana

AT5G07810.1 Score: 1

Coccomyxa sp. C-169

84109 Score: 1

Micromonas pusilla CCMP1545

50566 Score: 1

Micromonas sp. RCC299

59808 Score: 1

Ostreococcus lucimarinus

26262 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g40730.3 Score: 1
LOC_Os07g40730.1 Score: 0.992
LOC_Os07g40730.2 Score: 0.992

Ostreococcus tauri

12701 Score: 1

Sorghum bicolor

5034608 Score: 1

Selaginella moellendorffii

80139 Score: 1

Expression data

Expressed Sequence Tags

At.32666
Arabidopsis thaliana SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (AT5G07810) mRNA, complete cds /cds=p(1,3573) /gb=NM_120863
Os.50618
Oryza sativa Japonica Group cDNA clone:J033047B15, full insert sequence /gb=AK073674

Domain Architecture

SNF2_N PF00176 GSVIVP00016259001
DomainStartEndBit scoreE-value
SNF2_N208500131.8e-09
Helicase_C58165966.31.1e-16

Sequences