Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00016312001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00016312001
Family
NAC
3D structure (top 5)
1UT7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

496302 Score: 1

Arabidopsis thaliana

AT5G61430.1 Score: 1

Carica papaya

evm.TU.supercontig_111.23 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g38720.1 Score: 1

Populus trichocarpa

574807 Score: 1

Zea mays

GRMZM2G009892_P01 Score: 1
GRMZM2G009892_P02 Score: 1
GRMZM2G009892_P03 Score: 1
GRMZM2G134383_P01 Score: 1
GRMZM2G134383_P02 Score: 1
GRMZM2G134383_P03 Score: 1

Expression data

Expressed Sequence Tags

At.24490
Arabidopsis thaliana putative NAM / CUC2 protein (At5g39610) mRNA, complete cds /cds=p(124,981) /gb=AY056327
At.27906
Arabidopsis thaliana ANAC046 (Arabidopsis NAC domain containing protein 46); transcription factor (ANAC046) mRNA, complete cds /cds=p(212,1228) /gb=NM_111277
At.32689
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH5ZF02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX832226
At.53370
47-L020254-065-002-G06-SeLA MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 002-G06, mRNA sequence /clone=002-G06 /gb=DR750602
At.55538
Arabidopsis thaliana CUC2 (CUP-SHAPED COTYLEDON 2); transcription factor (CUC2) mRNA, complete cds /cds=p(29,1156) /gb=NM_124774
At.5743
Arabidopsis thaliana CUC1 (CUP-SHAPED COTYLEDON1); transcription factor (CUC1) mRNA, complete cds /cds=p(30,962) /gb=NM_112380
At.7461
Arabidopsis thaliana ANAC100/ATNAC5 (Arabidopsis NAC domain containing protein 100); transcription factor (ANAC100/ATNAC5) mRNA, complete cds /cds=p(209,1219) /gb=NM_125536
Hv.18323
HV_CEb0014L22f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEb0014L22f, mRNA sequence /clone=HV_CEb0014L22f /gb=BF066063
Mtr.12356
Medicago truncatula clone MTYF5_F6_F7_F81G-M-19 unknown mRNA /cds=p(501,1235) /gb=BT051637
Os.15708
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA218A09, full insert sequence /gb=CT830107
Os.18414
Oryza sativa (japonica cultivar-group) Os06g0344900 (Os06g0344900) mRNA, complete cds /cds=p(1,1122) /gb=NM_001064113
Os.51378
Oryza sativa Japonica Group cDNA clone:001-105-G11, full insert sequence /cds=p(105,1076) /gb=AK062675
Os.7362
Oryza sativa Japonica Group cDNA clone:J033072L16, full insert sequence /cds=p(191,1096) /gb=AK073876
Pba.8743
WS02523.B21_K07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_K07 3', mRNA sequence /clone=WS02523_K07 /clone_end=3' /gb=DT483811
Pth.8743
WS02523.B21_K07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_K07 3', mRNA sequence /clone=WS02523_K07 /clone_end=3' /gb=DT483811
Sbi.7063
ANR1_2_E11.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_2_E11_A002 5', mRNA sequence /clone=ANR1_2_E11_A002 /clone_end=5' /gb=CX606383 /gi=57803843

Domain Architecture

NAM PF02365 GSVIVP00016312001
DomainStartEndBit scoreE-value
NAM16142312.87.1e-91

Sequences