Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00017686001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00017686001
Family
NAC
3D structure (top 5)
1UT7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

873301 Score: 1

Arabidopsis thaliana

AT3G18400.1 Score: 1

Carica papaya

evm.TU.supercontig_3.501 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g01470.1 Score: 1

Sorghum bicolor

4021208 Score: 1

Zea mays

GRMZM2G031120_P01 Score: 1

Expression data

Expressed Sequence Tags

At.23511
Arabidopsis thaliana clone RAFL14-80-C22 (R20123) putative NAM (no apical meristem) protein (At5g18270) mRNA, complete cds /cds=p(196,1203) /gb=BT005713
At.24490
Arabidopsis thaliana putative NAM / CUC2 protein (At5g39610) mRNA, complete cds /cds=p(124,981) /gb=AY056327
At.27282
Arabidopsis thaliana ANAC059/ATNAC3 (Arabidopsis NAC domain containing protein 59); protein heterodimerization/ transcription factor (ANAC059/ATNAC3) mRNA, complete cds /cds=p(175,1131) /gb=NM_113825
At.27906
Arabidopsis thaliana ANAC046 (Arabidopsis NAC domain containing protein 46); transcription factor (ANAC046) mRNA, complete cds /cds=p(212,1228) /gb=NM_111277
At.39159
Arabidopsis thaliana ANAC038/ANAC039; transcription factor (ANAC038/ANAC039) mRNA, complete cds /cds=p(95,1045) /gb=NM_179723
At.52530
Arabidopsis thaliana CUC3 (CUP SHAPED COTYLEDON3); transcription factor (CUC3) mRNA, complete cds /cds=p(100,1104) /gb=NM_106292
At.53370
47-L020254-065-002-G06-SeLA MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 002-G06, mRNA sequence /clone=002-G06 /gb=DR750602
At.55538
Arabidopsis thaliana CUC2 (CUP-SHAPED COTYLEDON 2); transcription factor (CUC2) mRNA, complete cds /cds=p(29,1156) /gb=NM_124774
At.5743
Arabidopsis thaliana CUC1 (CUP-SHAPED COTYLEDON1); transcription factor (CUC1) mRNA, complete cds /cds=p(30,962) /gb=NM_112380
At.7461
Arabidopsis thaliana ANAC100/ATNAC5 (Arabidopsis NAC domain containing protein 100); transcription factor (ANAC100/ATNAC5) mRNA, complete cds /cds=p(209,1219) /gb=NM_125536
Mtr.12356
Medicago truncatula clone MTYF5_F6_F7_F81G-M-19 unknown mRNA /cds=p(501,1235) /gb=BT051637
Os.13548
Oryza sativa Japonica Group cDNA, clone: J075186C19, full insert sequence /cds=p(70,1032) /gb=AK242268
Os.15708
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA218A09, full insert sequence /gb=CT830107
Os.18337
Oryza sativa Japonica Group cDNA clone:002-127-E05, full insert sequence /gb=AK107407
Os.18414
Oryza sativa (japonica cultivar-group) Os06g0344900 (Os06g0344900) mRNA, complete cds /cds=p(1,1122) /gb=NM_001064113
Os.51378
Oryza sativa Japonica Group cDNA clone:001-105-G11, full insert sequence /cds=p(105,1076) /gb=AK062675
Os.7235
Oryza sativa Japonica Group cDNA clone:J013046E14, full insert sequence /cds=p(181,1257) /gb=AK065989
Os.7362
Oryza sativa Japonica Group cDNA clone:J033072L16, full insert sequence /cds=p(191,1096) /gb=AK073876
Os.9492
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021O03, full insert sequence /gb=CT834765
Sbi.7063
ANR1_2_E11.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_2_E11_A002 5', mRNA sequence /clone=ANR1_2_E11_A002 /clone_end=5' /gb=CX606383 /gi=57803843

Domain Architecture

NAM PF02365 GSVIVP00017686001
DomainStartEndBit scoreE-value
NAM5131307.92.1e-89

Sequences