Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00018167001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00018167001
Family
C2H2
3D structure (top 5)
2W2I 2OX0 2J7J 2DLK 1UBD
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487204 Score: 1

Arabidopsis thaliana

AT5G04240.1 Score: 1

Physcomitrella patens

167193 Score: 1

Populus trichocarpa

725017 Score: 1

Selaginella moellendorffii

440762 Score: 1

Expression data

Expressed Sequence Tags

At.10092
Arabidopsis thaliana ELF6 (EARLY FLOWERING 6); transcription factor (ELF6) mRNA, complete cds /cds=p(1,4023) /gb=NM_120506
At.3169
Arabidopsis thaliana REF6 (RELATIVE OF EARLY FLOWERING 6); transcription factor (REF6) mRNA, complete cds /cds=p(1,4083) /gb=NM_148863
Os.52727
Oryza sativa Japonica Group cDNA clone:J023001N18, full insert sequence /gb=AK068952
Os.57105
Oryza sativa Japonica Group cDNA clone:002-173-D09, full insert sequence /gb=AK110927
Ppa.20331
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_167193) mRNA, complete cds /cds=p(1,6099) /gb=XM_001771491
Pth.12495
UM58TD12.3pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM58TD12 3', mRNA sequence /clone=UM58TD12 /clone_end=3' /gb=DN491069

Domain Architecture

JmjN PF02375 GSVIVP00018167001
DomainStartEndBit scoreE-value
JmjN175067.93.8e-17
JmjC300419172.61.2e-48
zf-C2H212111236190.019
zf-C2H21264128818.70.024
zf-C2H21294132024.80.00035

Sequences