Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00018606001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00018606001
Family
SNF2
3D structure (top 5)
1Z3I 1Z5Z 1Z63 3DMQ 1WP9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

878527 Score: 1

Arabidopsis thaliana

AT1G03750.1 Score: 1

Chlorella sp. NC64A

136777 Score: 1

Carica papaya

evm.TU.supercontig_83.59 Score: 1

Coccomyxa sp. C-169

33667 Score: 1

Micromonas pusilla CCMP1545

15096 Score: 1

Micromonas sp. RCC299

58392 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g15890.1 Score: 1

Physcomitrella patens

40675 Score: 1

Populus trichocarpa

782376 Score: 1

Sorghum bicolor

4868945 Score: 1

Selaginella moellendorffii

50956 Score: 1

Zea mays

GRMZM2G036695_P01 Score: 1

Expression data

Expressed Sequence Tags

At.42526
Arabidopsis thaliana CHR9/SNF2/SWI2 (chromatin remodeling 9); helicase (CHR9/SNF2/SWI2) mRNA, complete cds /cds=p(1,2589) /gb=NM_100254
Hv.1798
HS01D09T HS Hordeum vulgare subsp. vulgare cDNA clone HS01D09 5-PRIME, mRNA sequence /clone=HS01D09 /clone_end=5' /gb=BQ466665
Os.10835
Oryza sativa Japonica Group cDNA clone:J023109O07, full insert sequence /cds=p(15,2585) /gb=AK071717

Domain Architecture

SNF2_N PF00176 GSVIVP00018606001
DomainStartEndBit scoreE-value
SNF2_N129428246.47.1e-71
Helicase_C55363193.47.9e-25

Sequences