Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00018620001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00018620001
Family
C3H
3D structure (top 5)
3D2Q 2RPP 2E5S 1M9O 3D2N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

470353 Score: 1

Arabidopsis thaliana

AT1G03790.1 Score: 1

Populus trichocarpa

827173 Score: 1

Selaginella moellendorffii

443970 Score: 1

Zea mays

GRMZM2G093404_P01 Score: 1

Expression data

Expressed Sequence Tags

At.20940
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G44260) mRNA, complete cds /cds=p(107,1252) /gb=NM_123793
At.23916
Arabidopsis thaliana ATCTH (Arabidopsis thaliana Cys3His zinc finger protein); transcription factor (ATCTH) mRNA, complete cds /cds=p(100,1047) /gb=NM_128150
At.5281
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G12850) mRNA, complete cds /cds=p(261,2381) /gb=NM_121288
At.67031
AV530845 Arabidopsis thaliana flower buds Columbia Arabidopsis thaliana cDNA clone FB010d03F 3', mRNA sequence /clone=FB010d03F /clone_end=3' /gb=AV530845
Cre.15393
Chlamydomonas reinhardtii predicted protein (CHLREDRAFT_182666) mRNA, partial cds /cds=p(119,487) /gb=XM_001693381
Os.20244
Oryza sativa Japonica Group cDNA clone:J023119N23, full insert sequence /cds=p(113,1273) /gb=AK100770
Os.31975
Oryza sativa Japonica Group cDNA clone:002-102-F01, full insert sequence /gb=AK106392
Os.74292
Oryza sativa (japonica cultivar-group) Os03g0698800 (Os03g0698800) mRNA, complete cds /cds=p(596,2890) /gb=NM_001057517
Os.80954
Oryza sativa Japonica Group cDNA, clone: J043017N22, full insert sequence /gb=AK287452
Pth.3311
Populus trichocarpa clone WS01117_K24 unknown mRNA /cds=p(46,1200) /gb=EF144742
Vvi.22738
WIN0815.C21_H20 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0815_H20 3', mRNA sequence /clone=WIN0815_H20 /clone_end=3' /gb=EC962793

Domain Architecture

zf-CCCH PF00642 GSVIVP00018620001
DomainStartEndBit scoreE-value
zf-CCCH12114629.81.1e-05
zf-CCCH1561784.70.36

Sequences