Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00019287001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00019287001
Family
NAC
3D structure (top 5)
1UT7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

887272 Score: 1

Arabidopsis thaliana

AT1G01720.1 Score: 1

Carica papaya

evm.TU.supercontig_37.27 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g66120.1 Score: 1

Populus trichocarpa

558471 Score: 1
654710 Score: 1

Sorghum bicolor

148372 Score: 1

Zea mays

GRMZM2G014653_P02 Score: 1

Expression data

Expressed Sequence Tags

At.134
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH30ZB10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX816139
At.17802
Arabidopsis thaliana ANAC032 (Arabidopsis NAC domain containing protein 32); transcription factor (ANAC032) mRNA, complete cds /cds=p(76,837) /gb=NM_106394
At.27826
Arabidopsis thaliana At5g08790 mRNA for putative ATAF2 protein, complete cds, clone: RAFL21-25-G05 /cds=p(116,577) /gb=AK118910
At.49213
Arabidopsis thaliana ANAC102 (Arabidopsis NAC domain containing protein 102); transcription factor (ANAC102) mRNA, complete cds /cds=p(1,939) /gb=NM_125774
Hv.1425
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf19c03, mRNA sequence /gb=AK249102
Hv.15755
Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (nac6 gene) /cds=p(160,1074) /gb=AM500854
Hv.6550
Hordeum vulgare subsp. vulgare mRNA for putative NAC transcription factor (nac4 gene) /cds=p(156,992) /gb=AM500853
Mtr.10860
Medicago truncatula clone MTYF9_FA_FB_FC1G-B-24 unknown mRNA /cds=p(140,1018) /gb=BT052284
Mtr.14266
META326TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474238
Mtr.22275
EST1226545 MTY Medicago truncatula cDNA clone MTYAV46, mRNA sequence /clone=MTYAV46 /gb=DW017584
Mtr.4556
EST611106 KVKC Medicago truncatula cDNA clone pKVKC-7B8, mRNA sequence /clone=pKVKC-7B8 /gb=BQ165237
Os.4384
Oryza sativa (japonica cultivar-group) NAC protein mRNA, complete cds /cds=p(105,1061) /gb=AY986504
Os.51926
Oryza sativa (japonica cultivar-group) Os11g0184900 (Os11g0184900) mRNA, complete cds /cds=p(99,1088) /gb=NM_001072451
Pba.5244
WS02532.BR_E12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_E12 5', mRNA sequence /clone=WS02532_E12 /clone_end=5' /gb=DT481575
Pth.12478
UM54TC12.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM54TC12 5', mRNA sequence /clone=UM54TC12 /clone_end=5' /gb=DN501032
Pth.5244
WS02532.BR_E12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_E12 5', mRNA sequence /clone=WS02532_E12 /clone_end=5' /gb=DT481575
Sbi.14555
RHOH1_43_E04.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_43_E04_A002 5', mRNA sequence /clone=RHOH1_43_E04_A002 /clone_end=5' /gb=CN130769 /gi=45959585
Sbi.15189
OX1_57_D06.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_57_D06_A002 5', mRNA sequence /clone=OX1_57_D06_A002 /clone_end=5' /gb=CN137491 /gi=45971143
Sbi.18273
SA1_6_F06.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor cDNA clone SA1_6_F06_A002 5', mRNA sequence /clone=SA1_6_F06_A002 /clone_end=5' /gb=CD424565 /gi=31330828
Vvi.13989
S5B07059 Fruits 7-9 mm treated with GA3 (VvS5) Vitis vinifera cDNA clone S5B07059, mRNA sequence /clone=S5B07059 /gb=EE086945

Domain Architecture

NAM PF02365 GSVIVP00019287001
DomainStartEndBit scoreE-value
NAM9134306.84.5e-89

Sequences