Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00019732001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00019732001
Family
SNF2
3D structure (top 5)
2I4I 1S2M 2VA8 2EYQ 1HV8
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

891646 Score: 1

Arabidopsis thaliana

AT1G48310.1 Score: 1

Cyanidioschyzon merolae

CMR070C Score: 1

Chlorella sp. NC64A

57917 Score: 1

Coccomyxa sp. C-169

42733 Score: 1

Micromonas pusilla CCMP1545

1244 Score: 1

Micromonas sp. RCC299

87840 Score: 1

Ostreococcus lucimarinus

1244 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g44210.1 Score: 1

Ostreococcus tauri

26819 Score: 1

Physcomitrella patens

107791 Score: 1

Populus trichocarpa

228966 Score: 1

Sorghum bicolor

5052111 Score: 1

Selaginella moellendorffii

76516 Score: 1

Zea mays

GRMZM2G126774_P04 Score: 1
GRMZM2G126774_P01 Score: 0.931

Expression data

Expressed Sequence Tags

At.71075
Arabidopsis thaliana SNF2 domain-containing protein / helicase domain-containing protein (AT1G48310) mRNA, complete cds /cds=p(77,2098) /gb=NM_103728
Os.23232
Oryza sativa Japonica Group cDNA clone:J013169J18, full insert sequence /cds=p(10,2253) /gb=AK069020
Sbi.10998
DG1_22_A08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence /gb=BE357874
Vvi.14294
CAB20003_IVa_Fa_H09 Cabernet Sauvignon Flower bloom - CAB2 Vitis vinifera cDNA clone CAB20003_IVa_Fa_H09 5', mRNA sequence /clone=CAB20003_IVa_Fa_H09 /clone_end=5' /gb=CF208624

Domain Architecture

SNF2_N PF00176 GSVIVP00019732001
DomainStartEndBit scoreE-value
SNF2_N13542852.12.2e-12
Helicase_C46354170.65.6e-18

Sequences