Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00019796001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00019796001
Family
C3H
3D structure (top 5)
1M9O 2E5S 2CQE 2D9N 2RHK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

477944 Score: 1

Arabidopsis thaliana

AT3G06410.1 Score: 1

Populus trichocarpa

229700 Score: 1

Expression data

Expressed Sequence Tags

At.21006
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G47850) mRNA, complete cds /cds=p(281,1687) /gb=NM_130352
At.22535
Arabidopsis thaliana nucleic acid binding (AT5G18550) mRNA, complete cds /cds=p(338,1735) /gb=NM_121860
At.27771
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-11-O09 /cds=p(267,1655) /gb=AK230312
Mtr.10686
EST647280 HOGA Medicago truncatula cDNA clone HOGA-31I22, mRNA sequence /clone=HOGA-31I22 /gb=CB894488
Os.9029
Oryza sativa Japonica Group cDNA clone:J033073E09, full insert sequence /cds=p(298,1698) /gb=AK073920
Os.9931
Oryza sativa Japonica Group cDNA clone:J013116H24, full insert sequence /cds=p(333,1727) /gb=AK111633
Vvi.8684
WIN1149.C21_O06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1149_O06 3', mRNA sequence /clone=WIN1149_O06 /clone_end=3' /gb=EC993939

Domain Architecture

zf-CCCH PF00642 GSVIVP00019796001
DomainStartEndBit scoreE-value
zf-CCCH507645.42.2e-10
zf-CCCH9612243.67.9e-10
zf-CCCH14216842.51.7e-09
zf-CCCH30433047.64.7e-11
zf-CCCH35037638.82.1e-08

Sequences