Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00019809001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00019809001
Family
SNF2
3D structure (top 5)
1WP9 3FHT 2DB3 1HV8 2I4I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

477943 Score: 1

Arabidopsis thaliana

AT3G06400.1 Score: 1

Cyanidioschyzon merolae

CMQ363C Score: 1

Chlorella sp. NC64A

34395 Score: 1

Carica papaya

evm.TU.supercontig_16.131 Score: 1

Chlamydomonas reinhardtii

135484 Score: 1

Coccomyxa sp. C-169

82113 Score: 1

Micromonas pusilla CCMP1545

28265 Score: 1

Micromonas sp. RCC299

59206 Score: 1
91017 Score: 0.912

Ostreococcus lucimarinus

12759 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g27040.1 Score: 1

Ostreococcus tauri

34063 Score: 1

Physcomitrella patens

216086 Score: 1

Populus trichocarpa

229734 Score: 1

Sorghum bicolor

5053112 Score: 1

Selaginella moellendorffii

440203 Score: 1

Zea mays

GRMZM2G010085_P01 Score: 1

Expression data

Expressed Sequence Tags

At.19176
Arabidopsis thaliana CHR17 (CHROMATIN REMODELING FACTOR17); DNA-dependent ATPase (CHR17) mRNA, complete cds /cds=p(109,3327) /gb=NM_180516
At.28209
Arabidopsis thaliana CHR11 (CHROMATIN-REMODELING PROTEIN 11); DNA-dependent ATPase (CHR11) mRNA, complete cds /cds=p(75,3242) /gb=NM_111515
Cre.13564
Chlamydomonas reinhardtii strain CC-503 cw92 mt+ /cds=p(98,3280) /gb=XM_001690973
Mtr.22697
EST1228079 MTY Medicago truncatula cDNA clone MTYBF11, mRNA sequence /clone=MTYBF11 /gb=DW019118
Os.2916
Oryza sativa Japonica Group cDNA clone:J023117L05, full insert sequence /gb=AK100732
Os.32330
Oryza sativa Japonica Group cDNA clone:001-115-D05, full insert sequence /cds=p(93,3416) /gb=AK105265
Ppa.17077
Physcomitrella patens subsp. patens SNF2 family DNA-dependent ATPase (CHR1529) mRNA, complete cds /cds=p(34,3132) /gb=XM_001771240
Vvi.4483
CAB2SG0002_IIaR_H10 Cabernet Sauvignon Berry - CAB2SG Vitis vinifera cDNA clone CAB2SG0002_IIaR_H10 3', mRNA sequence /clone=CAB2SG0002_IIaR_H10 /clone_end=3' /gb=CB346945

Domain Architecture

SNF2_N PF00176 GSVIVP00019809001
DomainStartEndBit scoreE-value
SNF2_N144422476.34.2e-140
Helicase_C477556100.94.4e-27
HAND702792151.3e-07
Myb_DNA-binding79383922.70.0015
SLIDE848961241.71.8e-69

Sequences