Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00019826001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00019826001
Family
TUB
3D structure (top 5)
2FIM 3C5N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Chlamydomonas reinhardtii

17453 Score: 1

Coccomyxa sp. C-169

25937 Score: 1

Micromonas pusilla CCMP1545

35442 Score: 1

Micromonas sp. RCC299

63330 Score: 1

Ostreococcus lucimarinus

44336 Score: 1

Expression data

Expressed Sequence Tags

At.18294
Arabidopsis thaliana AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor (AtTLP6) mRNA, complete cds /cds=p(273,1514) /gb=NM_103621
At.21504
Arabidopsis thaliana AtTLP2 (TUBBY LIKE PROTEIN 2); phosphoric diester hydrolase/ transcription factor (AtTLP2) mRNA, complete cds /cds=p(479,1663) /gb=NM_001036292
At.27566
Arabidopsis thaliana putative tubby protein (At2g47900) mRNA, complete cds /cds=p(455,1675) /gb=AY074273
At.31402
Arabidopsis thaliana mRNA for tub family-like protein, clone: RAFL14-43-C05 /gb=AK227861
At.46725
Arabidopsis thaliana ATTLP9 (TUBBY-LIKE PROTEIN 9); phosphoric diester hydrolase/ protein binding / transcription factor (ATTLP9) mRNA, complete cds /cds=p(261,1403) /gb=NM_111513
Os.21061
Oryza sativa (japonica cultivar-group) Os07g0667000 (Os07g0667000) mRNA, complete cds /cds=p(247,1467) /gb=NM_001067107
Os.61163
Oryza sativa Japonica Group cDNA clone:J033091L01, full insert sequence /cds=p(199,894) /gb=AK102370
Ppa.17533
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_190792) mRNA, complete cds /cds=p(1,1287) /gb=XM_001772550
Ppa.6953
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_221905) mRNA, complete cds /cds=p(1,1278) /gb=XM_001777454
Pth.11141
Populus trichocarpa clone WS01217_E07 unknown mRNA /cds=p(196,1374) /gb=EF146852
Pth.4669
Populus trichocarpa clone WS0115_J02 unknown mRNA /cds=p(226,1497) /gb=EF146106

Domain Architecture

F-box PF00646 GSVIVP00019826001
DomainStartEndBit scoreE-value
F-box207529.81.1e-05
Tub86325443.43.4e-130

Sequences