Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00019937001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00019937001
Family
SNF2
3D structure (top 5)
1WP9 2FWR 1Z3I 3DMQ 1Z5Z
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

871950 Score: 1

Arabidopsis thaliana

AT3G06010.1 Score: 1

Cyanidioschyzon merolae

CMH195C Score: 1

Chlorella sp. NC64A

56509 Score: 1

Carica papaya

evm.TU.supercontig_1278.1 Score: 1

Coccomyxa sp. C-169

82024 Score: 1

Micromonas sp. RCC299

56143 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g05230.1 Score: 1

Physcomitrella patens

40536 Score: 1

Populus trichocarpa

419389 Score: 1

Sorghum bicolor

5060089 Score: 1

Selaginella moellendorffii

102849 Score: 1

Zea mays

GRMZM2G102625_P01 Score: 1

Expression data

Expressed Sequence Tags

At.40578
Arabidopsis thaliana ATCHR12; ATP binding / DNA binding (ATCHR12) mRNA, complete cds /cds=p(1,3399) /gb=NM_111475
At.43995
Arabidopsis thaliana homeotic gene regulator, putative (AT5G19310) mRNA, complete cds /cds=p(128,3322) /gb=NM_121936
Hv.10685
AU252285 salt-stressed barley root cDNA Hordeum vulgare subsp. vulgare cDNA clone BR-S22 similar to putative transcription regulator, mRNA sequence /clone=BR-S22 /gb=AU252285
Os.52584
Oryza sativa Japonica Group cDNA clone:J013133N02, full insert sequence /gb=AK068173

Domain Architecture

ResIII PF04851 GSVIVP00019937001
DomainStartEndBit scoreE-value
ResIII3675322.63.2e-05
SNF2_N373666443.92.4e-130
Helicase_C7197981014.2e-27

Sequences