Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00022099001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00022099001
Family
SNF2
3D structure (top 5)
2FWR 1Z3I 1Z5Z 1Z63 1WP9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

489124 Score: 1

Arabidopsis thaliana

AT5G22750.1 Score: 1

Cyanidioschyzon merolae

CMR259C Score: 1

Carica papaya

evm.TU.supercontig_47.56 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g32570.1 Score: 1

Physcomitrella patens

105578 Score: 1

Populus trichocarpa

293462 Score: 1

Sorghum bicolor

4756455 Score: 1

Zea mays

GRMZM2G030768_P01 Score: 1

Expression data

Expressed Sequence Tags

At.31042
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-05-A16 /cds=p(213,3302) /gb=AK228695
At.55338
Arabidopsis thaliana SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein (AT5G43530) mRNA, complete cds /cds=p(1,3834) /gb=NM_123719
Os.51680
Oryza sativa Japonica Group cDNA clone:001-114-F01, full insert sequence /cds=p(611,2434) /gb=AK063375
Os.87996
Oryza sativa Japonica Group cDNA clone:J033083D05, full insert sequence /gb=AK102094

Domain Architecture

UBA PF00627 GSVIVP00022099001
DomainStartEndBit scoreE-value
UBA84425.40.00024
HIRAN11222273.11e-18
SNF2_N346690242.21.3e-69
zf-C3HC474578446.51e-10
Helicase_C84992781.62.8e-21

Sequences