Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00022176001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00022176001
Family
MYB
3D structure (top 5)
2K9N 1GV2 1H89 1H8A 2DIM
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.10916
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH59ZH02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX832216
At.10923
Arabidopsis thaliana AtMYB87/MYB87 (myb domain protein 87); DNA binding / transcription factor (AtMYB87/MYB87) mRNA, complete cds /cds=p(32,949) /gb=NM_119940
At.742
Arabidopsis thaliana ATMYB84/MYB84/RAX3 (myb domain protein 84); DNA binding / transcription factor (ATMYB84/MYB84/RAX3) mRNA, complete cds /cds=p(207,1139) /gb=NM_114829
At.7489
Arabidopsis thaliana mRNA for Myb-related transcription factor-like protein, complete cds, clone: RAFL16-14-A17 /cds=p(80,1081) /gb=AK228818
Mtr.11094
MEUBI94TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=GE348484
Mtr.8106
AC4591 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY618275
Os.49824
Oryza sativa Japonica Group cDNA clone:J023093J22, full insert sequence /cds=p(122,1072) /gb=AK111788
Os.55636
Oryza sativa Japonica Group cDNA clone:002-143-C10, full insert sequence /gb=AK108452
Os.58166
Oryza sativa (japonica cultivar-group) Os04g0470600 (Os04g0470600) mRNA, complete cds /cds=p(1,1119) /gb=NM_001059587
Os.76732
Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence /cds=p(109,1005) /gb=AK241370
Os.79998
Oryza sativa (japonica cultivar-group) Os02g0786300 (Os02g0786300) mRNA, complete cds /cds=p(1,1692) /gb=NM_001054869
Os.88582
Oryza sativa Japonica Group cDNA clone:006-308-C02, full insert sequence /cds=p(103,1068) /gb=AK112018
Os.91599
OD101C05 OD Oryza sativa cDNA 5' similar to myb - related protein (transcription factor), mRNA sequence /clone_end=5' /gb=BE040062
Ptp.3869
R007C04.5pR Populus root cDNA library Populus tremula x Populus tremuloides cDNA clone R007C04 5', mRNA sequence /clone=R007C04 /clone_end=5' /gb=DN497506
Vvi.21711
WIN1143.C21_N24 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1143_N24 3', mRNA sequence /clone=WIN1143_N24 /clone_end=3' /gb=EC991898

Domain Architecture

Myb_DNA-binding PF00249 GSVIVP00022176001
DomainStartEndBit scoreE-value
Myb_DNA-binding146249.11.7e-11
Myb_DNA-binding6811339.41.4e-08

Sequences