Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00022239001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00022239001
Family
SNF2
3D structure (top 5)
2FWR 1Z3I 1Z5Z 3DMQ 1Z63
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

480306 Score: 1

Arabidopsis thaliana

AT2G13370.1 Score: 1

Chlorella sp. NC64A

144734 Score: 1

Chlamydomonas reinhardtii

188131 Score: 1

Micromonas sp. RCC299

64845 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g46590.1 Score: 1

Physcomitrella patens

132084 Score: 1

Sorghum bicolor

5052190 Score: 1

Selaginella moellendorffii

440815 Score: 1

Zea mays

GRMZM2G035802_P01 Score: 1

Expression data

Expressed Sequence Tags

At.40665
Arabidopsis thaliana CHR5 (chromatin remodeling 5); ATP binding / DNA binding / chromatin binding / helicase (CHR5) mRNA, complete cds /cds=p(344,5518) /gb=NM_126926
Mtr.11964
EST647900 HOGA Medicago truncatula cDNA clone HOGA-33J17, mRNA sequence /clone=HOGA-33J17 /gb=CB895108
Mtr.15699
EST507982 HOGA Medicago truncatula cDNA clone pHOGA-7I6 5' end, mRNA sequence /clone=pHOGA-7I6 /clone_end=5' /gb=BG646363
Ppa.17372
Physcomitrella patens subsp. patens SNF2 family DNA-dependent ATPase (CHR1544) mRNA, partial cds /cds=p(1,4335) /gb=XM_001781952

Domain Architecture

Chromo PF00385 GSVIVP00022239001
DomainStartEndBit scoreE-value
Chromo51356866.78.5e-17
SNF2_N608894403.73.1e-118
Helicase_C9561035100.27.2e-27

Sequences