Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00022744001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00022744001
Family
C2H2
3D structure (top 5)
2CSH 2DLQ 1TF6 2I13 2DMD
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G50700.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g14010.1 Score: 1

Expression data

Expressed Sequence Tags

At.24519
Arabidopsis thaliana putative zinc finger protein (At1g14580) mRNA, complete cds /cds=p(256,1659) /gb=AY091041
At.27643
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT5G66730) mRNA, complete cds /cds=p(520,2022) /gb=NM_126071
At.28709
Arabidopsis thaliana ATIDD11 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 11); nucleic acid binding / transcription factor/ zinc ion binding (ATIDD11) mRNA, complete cds /cds=p(452,1993) /gb=NM_112234
At.37112
Arabidopsis thaliana putative zinc finger protein (At1g55110) mRNA, complete cds /cds=p(91,1458) /gb=AY090998
At.42516
Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-40-M12 /cds=p(74,1594) /gb=AK227837
At.50264
Arabidopsis thaliana mRNA for zinc finger protein, complete cds, clone: RAFL09-26-M08 /cds=p(536,1894) /gb=AK226933
At.8713
Arabidopsis thaliana NUC (NUTCRACKER); nucleic acid binding / transcription factor/ zinc ion binding (NUC) mRNA, complete cds /cds=p(151,1551) /gb=NM_123783
Hv.10030
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence /gb=AK250971
Mtr.13451
EST529264 GPOD Medicago truncatula cDNA clone pGPOD-1G17 5' end, mRNA sequence /clone=pGPOD-1G17 /clone_end=5' /gb=BI307854
Mtr.17326
EST1226592 MTY Medicago truncatula cDNA clone MTYAW09, mRNA sequence /clone=MTYAW09 /gb=DW017631
Os.34720
Oryza sativa Japonica Group cDNA clone:J023050E05, full insert sequence /cds=p(231,1661) /gb=AK070390
Os.4648
Oryza sativa (japonica cultivar-group) Os01g0195000 (Os01g0195000) mRNA, complete cds /cds=p(472,1935) /gb=NM_001048823
Os.54518
Oryza sativa Japonica Group cDNA, clone: J100058I16, full insert sequence /gb=AK289209
Os.55091
Oryza sativa Japonica Group cDNA clone:002-129-B01, full insert sequence /gb=AK107468
Ppa.18496
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_166815) mRNA, complete cds /cds=p(1,3060) /gb=XM_001770363
Ppa.2328
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_168056) mRNA, complete cds /cds=p(1,3153) /gb=XM_001773598
Pth.8362
Populus trichocarpa clone WS01214_I21 unknown mRNA /cds=p(143,1456) /gb=EF146825
Vvi.21948
S1G03509 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G03509, mRNA sequence /clone=S1G03509 /gb=EE075968
Vvi.74
WIN0413.C21_C03 Cab Sauv pericarp normalized (WIN04) Vitis vinifera cDNA clone WIN0413_C03 3', mRNA sequence /clone=WIN0413_C03 /clone_end=3' /gb=EC931346

Domain Architecture

zf-C2H2 PF00096 GSVIVP00022744001
DomainStartEndBit scoreE-value
zf-C2H28710926.40.00011
zf-C2H216318520.60.0067

Sequences