Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00023017001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00023017001
Family
SNF2
3D structure (top 5)
1Z3I 1Z5Z 1Z63 1WP9 3DMQ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

866853 Score: 1

Arabidopsis thaliana

AT3G54280.1 Score: 1

Cyanidioschyzon merolae

CMS464C Score: 1

Coccomyxa sp. C-169

75072 Score: 1

Micromonas pusilla CCMP1545

50939 Score: 1

Micromonas sp. RCC299

62843 Score: 1

Ostreococcus lucimarinus

88543 Score: 1

Ostreococcus tauri

20168 Score: 1

Physcomitrella patens

184534 Score: 1

Populus trichocarpa

823728 Score: 1

Sorghum bicolor

4855583 Score: 1

Selaginella moellendorffii

186944 Score: 1

Zea mays

GRMZM2G180705_P01 Score: 1
GRMZM2G168096_P01 Score: 0.992

Expression data

Expressed Sequence Tags

At.35125
Arabidopsis thaliana ATP binding / DNA binding / helicase (AT3G54280) mRNA, complete cds /cds=p(1,6117) /gb=NM_115288
Hv.8874
HVSMEg0002I01f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0002I01f, mRNA sequence /clone=HVSMEg0002I01f /gb=AW982244
Os.53125
OC02F12 OC Oryza sativa cDNA 5' similar to helicase mot1, mRNA sequence /clone_end=5' /gb=BE039708
Os.58792
Oryza sativa Japonica Group cDNA clone:J023066D07, full insert sequence /gb=AK070938
Ppa.21477
Physcomitrella patens subsp. patens SNF2 superfamily chromatin remodeling protein (CHR1532) mRNA, complete cds /cds=p(1,6126) /gb=XM_001765165
Sbi.4371
FE1_12_E08.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_12_E08_A002 5', mRNA sequence /clone=FE1_12_E08_A002 /clone_end=5' /gb=CF073830 /gi=33110489
Vvi.10472
WIN0211.TB24_D14 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN0211_D14 3', mRNA sequence /clone=WIN0211_D14 /clone_end=3' /gb=EC926130

Domain Architecture

HEAT PF02985 GSVIVP00023017001
DomainStartEndBit scoreE-value
HEAT16319921.20.0042
HEAT84588027.65e-05
HEAT92496019.10.018
SNF2_N10111311366.74.1e-107
Helicase_C1396147476.11.3e-19

Sequences