Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00023178001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00023178001
Family
C2H2
3D structure (top 5)
2EE8 2CSH 2DLQ 2I13 2DMD
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487085 Score: 1

Arabidopsis thaliana

AT5G03150.1 Score: 1

Carica papaya

evm.TU.supercontig_45.58 Score: 1

Expression data

Expressed Sequence Tags

At.13356
Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds /cds=p(67,1875) /gb=AY056174
At.13357
Arabidopsis thaliana ATIDD4 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 4) (ATIDD4) mRNA, complete cds /cds=p(360,1679) /gb=NM_001124782
At.1592
Arabidopsis thaliana JKD (JACKDAW); nucleic acid binding / protein binding / protein homodimerization/ transcription factor/ zinc ion binding (JKD) mRNA, complete cds /cds=p(206,1717) /gb=NM_120393
At.24519
Arabidopsis thaliana putative zinc finger protein (At1g14580) mRNA, complete cds /cds=p(256,1659) /gb=AY091041
At.27643
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT5G66730) mRNA, complete cds /cds=p(520,2022) /gb=NM_126071
At.28709
Arabidopsis thaliana ATIDD11 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 11); nucleic acid binding / transcription factor/ zinc ion binding (ATIDD11) mRNA, complete cds /cds=p(452,1993) /gb=NM_112234
At.37112
Arabidopsis thaliana putative zinc finger protein (At1g55110) mRNA, complete cds /cds=p(91,1458) /gb=AY090998
At.42516
Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-40-M12 /cds=p(74,1594) /gb=AK227837
Hv.10030
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence /gb=AK250971
Os.4648
Oryza sativa (japonica cultivar-group) Os01g0195000 (Os01g0195000) mRNA, complete cds /cds=p(472,1935) /gb=NM_001048823
Os.97953
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA204B21, full insert sequence /gb=CT832183
Ppa.18496
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_166815) mRNA, complete cds /cds=p(1,3060) /gb=XM_001770363
Ppa.2328
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_168056) mRNA, complete cds /cds=p(1,3153) /gb=XM_001773598
Pth.8362
Populus trichocarpa clone WS01214_I21 unknown mRNA /cds=p(143,1456) /gb=EF146825
Vvi.15345
WIN028.TB24.1_K22 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN028_K22 3', mRNA sequence /clone=WIN028_K22 /clone_end=3' /gb=EC925381

Domain Architecture

zf-C2H2 PF00096 GSVIVP00023178001
DomainStartEndBit scoreE-value
zf-C2H262825.60.0002
zf-C2H28210421.20.0044

Sequences