Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00023276001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00023276001
Family
SNF2
3D structure (top 5)
3DMQ 1Z3I 1C4O 1Z5Z 2FWR
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487302 Score: 1

Arabidopsis thaliana

AT5G05130.1 Score: 1

Chlorella sp. NC64A

135608 Score: 1

Carica papaya

evm.TU.supercontig_92.77 Score: 1

Chlamydomonas reinhardtii

177618 Score: 1

Micromonas pusilla CCMP1545

323 Score: 1

Micromonas sp. RCC299

99199 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g44800.1 Score: 1

Physcomitrella patens

211797 Score: 1

Populus trichocarpa

418053 Score: 1

Sorghum bicolor

4792841 Score: 1

Selaginella moellendorffii

110695 Score: 1

Zea mays

GRMZM2G148249_P01 Score: 1

Expression data

Expressed Sequence Tags

At.33030
Arabidopsis thaliana helicase-like transcription factor-like protein (At5g05130) mRNA, complete cds /cds=p(56,2644) /gb=AY093211
Os.58386
Oryza sativa (japonica cultivar-group) Os07g0642400 (Os07g0642400) mRNA, complete cds /cds=p(1,2466) /gb=NM_001066971
Ppa.14366
Physcomitrella patens subsp. patens SNF2 family DNA-dependent ATPase (CHR1531) mRNA, complete cds /cds=p(91,2472) /gb=XM_001765083
Pth.3432
WS0251.B21_O07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0251_O07 3', mRNA sequence /clone=WS0251_O07 /clone_end=3' /gb=CV240622

Domain Architecture

SNF2_N PF00176 GSVIVP00023276001
DomainStartEndBit scoreE-value
SNF2_N529187.83.8e-23
zf-C3HC433136924.90.00014
Helicase_C43851873.39.1e-19

Sequences