Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00023363001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00023363001
Family
C2H2
3D structure (top 5)
1TF6 2I13 2RPC 1A1H 2GLI
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

476336 Score: 1

Carica papaya

evm.TU.supercontig_66.17 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g03020.1 Score: 1

Physcomitrella patens

34788 Score: 1

Populus trichocarpa

287860 Score: 1

Sorghum bicolor

4844015 Score: 1

Selaginella moellendorffii

34350 Score: 1

Zea mays

GRMZM2G078167_P03 Score: 1
GRMZM2G117186_P01 Score: 1

Expression data

Expressed Sequence Tags

At.66854
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT1G72050) mRNA, complete cds /cds=p(498,1472) /gb=NM_105863
Hv.28100
HDP21G11T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP21G11, mRNA sequence /clone=HDP21G11 /gb=EX581667
Mtr.16912
EST638186 MTUS Medicago truncatula cDNA clone MTUS-28F5, mRNA sequence /clone=MTUS-28F5 /gb=CA920468
Os.18086
Oryza sativa Japonica Group cDNA clone:J023093M20, full insert sequence /cds=p(1816,2601) /gb=AK100473
Os.33140
Oryza sativa Japonica Group cDNA clone:J033054O17, full insert sequence /gb=AK101631
Pba.7326
WS02532.B21_H08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_H08 3', mRNA sequence /clone=WS02532_H08 /clone_end=3' /gb=DT486979
Pth.7326
WS02532.B21_H08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_H08 3', mRNA sequence /clone=WS02532_H08 /clone_end=3' /gb=DT486979

Domain Architecture

zf-C2H2 PF00096 GSVIVP00023363001
DomainStartEndBit scoreE-value
zf-C2H2184018.10.036
zf-C2H2628425.30.00026
zf-C2H210913329.41.5e-05
zf-C2H213816327.26.8e-05
zf-C2H224126621.20.0044

Sequences