Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00024864001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00024864001
Family
NAC
3D structure (top 5)
1UT7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os01g60020.1 Score: 1

Sorghum bicolor

5053907 Score: 1

Zea mays

GRMZM2G068973_P01 Score: 1

Expression data

Expressed Sequence Tags

At.10430
Arabidopsis thaliana At1g61110 mRNA for unknown protein, complete cds, clone: RAFL19-05-K20 /cds=p(117,1088) /gb=AK117878
At.17802
Arabidopsis thaliana ANAC032 (Arabidopsis NAC domain containing protein 32); transcription factor (ANAC032) mRNA, complete cds /cds=p(76,837) /gb=NM_106394
At.20460
Arabidopsis thaliana ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55); transcription factor (ATNAC3) mRNA, complete cds /cds=p(115,1068) /gb=NM_112418
At.27826
Arabidopsis thaliana At5g08790 mRNA for putative ATAF2 protein, complete cds, clone: RAFL21-25-G05 /cds=p(116,577) /gb=AK118910
At.49213
Arabidopsis thaliana ANAC102 (Arabidopsis NAC domain containing protein 102); transcription factor (ANAC102) mRNA, complete cds /cds=p(1,939) /gb=NM_125774
Hv.1425
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf19c03, mRNA sequence /gb=AK249102
Hv.15755
Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (nac6 gene) /cds=p(160,1074) /gb=AM500854
Hv.6550
Hordeum vulgare subsp. vulgare mRNA for putative NAC transcription factor (nac4 gene) /cds=p(156,992) /gb=AM500853
Mtr.10860
Medicago truncatula clone MTYF9_FA_FB_FC1G-B-24 unknown mRNA /cds=p(140,1018) /gb=BT052284
Mtr.14266
META326TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474238
Mtr.22275
EST1226545 MTY Medicago truncatula cDNA clone MTYAV46, mRNA sequence /clone=MTYAV46 /gb=DW017584
Mtr.4556
EST611106 KVKC Medicago truncatula cDNA clone pKVKC-7B8, mRNA sequence /clone=pKVKC-7B8 /gb=BQ165237
Os.26695
RECm0544 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone EI051E13, BI073B11, EI053I04, BI157H21, EI073L16, EI114F05, EI11 5', mRNA sequence /clone=EI051E13,_BI073B11,_EI053I04,_BI157H21,_EI073L16, _EI114F
Os.4384
Oryza sativa (japonica cultivar-group) NAC protein mRNA, complete cds /cds=p(105,1061) /gb=AY986504
Os.51926
Oryza sativa (japonica cultivar-group) Os11g0184900 (Os11g0184900) mRNA, complete cds /cds=p(99,1088) /gb=NM_001072451
Os.5549
Oryza sativa Japonica Group cDNA clone:J033052E11, full insert sequence /cds=p(59,889) /gb=AK073667
Pth.12478
UM54TC12.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM54TC12 5', mRNA sequence /clone=UM54TC12 /clone_end=5' /gb=DN501032
Pth.8122
Populus trichocarpa clone WS01228_D08 unknown mRNA /cds=p(89,790) /gb=EF147142
Sbi.14555
RHOH1_43_E04.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_43_E04_A002 5', mRNA sequence /clone=RHOH1_43_E04_A002 /clone_end=5' /gb=CN130769 /gi=45959585
Sbi.15189
OX1_57_D06.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_57_D06_A002 5', mRNA sequence /clone=OX1_57_D06_A002 /clone_end=5' /gb=CN137491 /gi=45971143

Domain Architecture

NAM PF02365 GSVIVP00024864001
DomainStartEndBit scoreE-value
NAM13141296.46.2e-86

Sequences