Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00025101001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00025101001
Family
C3H
3D structure (top 5)
2D9N 2E5S 2RHK 1M9O 2CQE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

477525 Score: 1

Arabidopsis thaliana

AT3G02830.1 Score: 1

Cyanidioschyzon merolae

CMF161C Score: 1

Oryza sativa subsp. japonica

LOC_Os11g28270.1 Score: 1
LOC_Os11g28270.2 Score: 0.928

Physcomitrella patens

14712 Score: 1

Populus trichocarpa

249034 Score: 1
424416 Score: 1

Sorghum bicolor

5040224 Score: 1

Selaginella moellendorffii

45667 Score: 1

Zea mays

GRMZM2G146514_P01 Score: 1
GRMZM2G146514_P02 Score: 1
GRMZM2G146514_P03 Score: 0.924

Expression data

Expressed Sequence Tags

At.21711
Arabidopsis thaliana ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding (ZFN3) mRNA, complete cds /cds=p(375,1439) /gb=NM_203061
At.23706
Arabidopsis thaliana ZFN1 (ZINC FINGER PROTEIN 1); nucleic acid binding (ZFN1) mRNA, complete cds /cds=p(274,1467) /gb=NM_111151
Mtr.10625
EST1225273 MTY Medicago truncatula cDNA clone MTYAF64, mRNA sequence /clone=MTYAF64 /gb=DW016312
Os.12914
Oryza sativa (japonica cultivar-group) Os11g0472000 (Os11g0472000) mRNA, partial cds /cds=p(291,1535) /gb=NM_001074410
Os.14912
Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence /cds=p(183,1547) /gb=AK111511
Os.19086
Oryza sativa Japonica Group cDNA clone:002-110-B05, full insert sequence /gb=AK112102
Ppa.20528
CAYY34829.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY34829 5', mRNA sequence /clone=CAYY34829 /clone_end=5' /gb=FC363526
Vvi.9025
VV_PEd0014f11.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV240837

Domain Architecture

zf-CCCH PF00642 GSVIVP00025101001
DomainStartEndBit scoreE-value
zf-CCCH214741.92.6e-09
zf-CCCH649029.31.5e-05
zf-CCCH11013644.15.4e-10
zf-CCCH26429045.71.8e-10
zf-CCCH31033647.64.9e-11

Sequences