Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00025499001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00025499001
Family
NAC
3D structure (top 5)
1UT7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

326242 Score: 1

Arabidopsis thaliana

AT5G18270.1 Score: 1
AT5G18270.2 Score: 0.991

Carica papaya

evm.TU.supercontig_594.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g21030.1 Score: 1

Physcomitrella patens

181032 Score: 1

Sorghum bicolor

4998167 Score: 1

Zea mays

GRMZM2G031001_P01 Score: 1

Expression data

Expressed Sequence Tags

At.23511
Arabidopsis thaliana clone RAFL14-80-C22 (R20123) putative NAM (no apical meristem) protein (At5g18270) mRNA, complete cds /cds=p(196,1203) /gb=BT005713
At.24490
Arabidopsis thaliana putative NAM / CUC2 protein (At5g39610) mRNA, complete cds /cds=p(124,981) /gb=AY056327
At.27282
Arabidopsis thaliana ANAC059/ATNAC3 (Arabidopsis NAC domain containing protein 59); protein heterodimerization/ transcription factor (ANAC059/ATNAC3) mRNA, complete cds /cds=p(175,1131) /gb=NM_113825
At.27906
Arabidopsis thaliana ANAC046 (Arabidopsis NAC domain containing protein 46); transcription factor (ANAC046) mRNA, complete cds /cds=p(212,1228) /gb=NM_111277
At.32689
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH5ZF02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX832226
At.53370
47-L020254-065-002-G06-SeLA MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 002-G06, mRNA sequence /clone=002-G06 /gb=DR750602
At.55538
Arabidopsis thaliana CUC2 (CUP-SHAPED COTYLEDON 2); transcription factor (CUC2) mRNA, complete cds /cds=p(29,1156) /gb=NM_124774
At.5743
Arabidopsis thaliana CUC1 (CUP-SHAPED COTYLEDON1); transcription factor (CUC1) mRNA, complete cds /cds=p(30,962) /gb=NM_112380
At.7461
Arabidopsis thaliana ANAC100/ATNAC5 (Arabidopsis NAC domain containing protein 100); transcription factor (ANAC100/ATNAC5) mRNA, complete cds /cds=p(209,1219) /gb=NM_125536
Os.13548
Oryza sativa Japonica Group cDNA, clone: J075186C19, full insert sequence /cds=p(70,1032) /gb=AK242268
Os.18337
Oryza sativa Japonica Group cDNA clone:002-127-E05, full insert sequence /gb=AK107407
Os.18414
Oryza sativa (japonica cultivar-group) Os06g0344900 (Os06g0344900) mRNA, complete cds /cds=p(1,1122) /gb=NM_001064113
Os.51378
Oryza sativa Japonica Group cDNA clone:001-105-G11, full insert sequence /cds=p(105,1076) /gb=AK062675
Os.7362
Oryza sativa Japonica Group cDNA clone:J033072L16, full insert sequence /cds=p(191,1096) /gb=AK073876
Sbi.1420
PH1_10_C03.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor cDNA clone PH1_10_C03_A002 5', mRNA sequence /clone=PH1_10_C03_A002 /clone_end=5' /gb=CF427746 /gi=34440447
Sbi.7063
ANR1_2_E11.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_2_E11_A002 5', mRNA sequence /clone=ANR1_2_E11_A002 /clone_end=5' /gb=CX606383 /gi=57803843
Vvi.12308
VV_PEa016a04.b1 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence /gb=EV227947

Domain Architecture

NAM PF02365 GSVIVP00025499001
DomainStartEndBit scoreE-value
NAM3130310.73.1e-90

Sequences