Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00025649001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00025649001
Family
SNF2
3D structure (top 5)
2FWR 1Z3I 1Z5Z 3DMQ 1Z63
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

907192 Score: 1

Arabidopsis thaliana

AT3G57300.1 Score: 1

Cyanidioschyzon merolae

CMT353C Score: 1

Carica papaya

evm.TU.supercontig_182.16 Score: 1

Coccomyxa sp. C-169

23197 Score: 1

Micromonas pusilla CCMP1545

18757 Score: 1

Ostreococcus lucimarinus

754 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g22900.1 Score: 1

Ostreococcus tauri

847 Score: 1

Populus trichocarpa

576236 Score: 1

Sorghum bicolor

4870786 Score: 1

Selaginella moellendorffii

444050 Score: 1

Zea mays

GRMZM2G169042_P01 Score: 1

Expression data

Expressed Sequence Tags

At.40665
Arabidopsis thaliana CHR5 (chromatin remodeling 5); ATP binding / DNA binding / chromatin binding / helicase (CHR5) mRNA, complete cds /cds=p(344,5518) /gb=NM_126926
At.910
Arabidopsis thaliana transcriptional activator, putative (AT3G57300) mRNA, complete cds /cds=p(125,4648) /gb=NM_115590
Os.52584
Oryza sativa Japonica Group cDNA clone:J013133N02, full insert sequence /gb=AK068173
Ppa.20291
Physcomitrella patens subsp. patens SNF2 family DNA-dependent ATPase (CHR1523) mRNA, complete cds /cds=p(1,4935) /gb=XM_001760767
Sbi.18356
ETH1_25_D04.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_25_D04_A002 5', mRNA sequence /clone=ETH1_25_D04_A002 /clone_end=5' /gb=CD432677 /gi=31348320

Domain Architecture

ResIII PF04851 GSVIVP00025649001
DomainStartEndBit scoreE-value
ResIII5697322.33.5e-05
SNF2_N575867379.94.6e-111
Helicase_C1150122890.17.6e-24

Sequences