Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00025892001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00025892001
Family
SNF2
3D structure (top 5)
2DB3 1HV8 1C4O 3FHT 1Z3I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

470503 Score: 1

Arabidopsis thaliana

AT1G05120.1 Score: 1

Carica papaya

evm.TU.supercontig_87.87 Score: 1

Coccomyxa sp. C-169

32750 Score: 1

Micromonas pusilla CCMP1545

58044 Score: 1

Micromonas sp. RCC299

81085 Score: 1

Ostreococcus lucimarinus

1396 Score: 1
857 Score: 1

Ostreococcus tauri

20757 Score: 1

Sorghum bicolor

4749144 Score: 1

Selaginella moellendorffii

123971 Score: 1

Zea mays

GRMZM2G021233_P02 Score: 1

Expression data

Expressed Sequence Tags

At.49853
Arabidopsis thaliana SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein (AT1G05120) mRNA, complete cds /cds=p(12,2513) /gb=NM_100390
At.51462
Arabidopsis thaliana DNA repair protein, putative (AT1G02670) mRNA, complete cds /cds=p(1,2037) /gb=NM_100147
Os.50017
Oryza sativa Japonica Group cDNA clone:J013084I15, full insert sequence /gb=AK066772
Ptp.7358
N011G08.5pR Populus bark cDNA library Populus tremula x Populus tremuloides cDNA clone N011G08 5', mRNA sequence /clone=N011G08 /clone_end=5' /gb=DN495020

Domain Architecture

SNF2_N PF00176 GSVIVP00025892001
DomainStartEndBit scoreE-value
SNF2_N47388226.66.2e-65
zf-C3HC441145028.72.4e-05
Helicase_C53160973.86.1e-19

Sequences