Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00026038001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00026038001
Family
HB
3D structure (top 5)
2H1K 2R5Y 1NK2 1FJL 2DMT
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G05230.1 Score: 1
AT1G05230.2 Score: 1
AT1G05230.3 Score: 0.974

Carica papaya

evm.TU.supercontig_8.217 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g53540.1 Score: 1
LOC_Os04g53540.2 Score: 1
LOC_Os04g53540.3 Score: 1
LOC_Os04g53540.4 Score: 1

Populus trichocarpa

834933 Score: 1

Zea mays

GRMZM2G130442_P02 Score: 1
GRMZM2G130442_P01 Score: 0.932

Expression data

Expressed Sequence Tags

At.19179
Arabidopsis thaliana homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (AT1G05230) mRNA, complete cds /cds=p(316,2481) /gb=NM_179265
At.21209
Arabidopsis thaliana HDG1 (HOMEODOMAIN GLABROUS1); DNA binding / transcription factor (HDG1) mRNA, complete cds /cds=p(162,2588) /gb=NM_115979
At.24442
Arabidopsis thaliana ANL2 (ANTHOCYANINLESS 2) (ANL2) mRNA, complete cds /cds=p(406,2118) /gb=NM_001125435
At.2706
Arabidopsis thaliana ATML1 (MERISTEM LAYER 1); DNA binding (ATML1) mRNA, complete cds /cds=p(467,2755) /gb=NM_001036615
At.38083
Arabidopsis thaliana DNA binding / transcription factor (AT2G32370) mRNA, complete cds /cds=p(240,2417) /gb=NM_128796
At.4047
Arabidopsis thaliana PDF2 (PROTODERMAL FACTOR2); DNA binding / transcription factor (PDF2) mRNA, complete cds /cds=p(449,2680) /gb=NM_116727
Hv.26642
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf24d09, mRNA sequence /gb=AK249246
Os.11988
Oryza sativa Japonica Group cDNA clone:J013120I03, full insert sequence /gb=AK120496
Os.12432
Oryza sativa Japonica Group Roc2 mRNA for GL2-type homeodomain protein, complete cds /cds=p(260,2611) /gb=AB101645
Os.20576
Oryza sativa Japonica Group cDNA, clone: J075197C04, full insert sequence /gb=AK318563
Os.6039
Oryza sativa Japonica Group cDNA clone:J013045A10, full insert sequence /gb=AK111544
Os.8833
Oryza sativa Japonica Group cDNA clone:002-108-E06, full insert sequence /gb=AK112099
Vvi.11868
WIN1121.C21_M07 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1121_M07 3', mRNA sequence /clone=WIN1121_M07 /clone_end=3' /gb=EC984389

Domain Architecture

Homeobox PF00046 GSVIVP00026038001
DomainStartEndBit scoreE-value
Homeobox5811484.53.8e-22
START246466321.71.5e-93

Sequences