Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00026159001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00026159001
Family
NAC
3D structure (top 5)
1UT7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

904148 Score: 1

Arabidopsis thaliana

AT2G46770.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g02300.1 Score: 1

Populus trichocarpa

245162 Score: 1

Sorghum bicolor

4896357 Score: 1

Zea mays

GRMZM2G074329_P01 Score: 1
GRMZM2G092465_P01 Score: 1

Expression data

Expressed Sequence Tags

At.35148
Arabidopsis thaliana clone 151034 mRNA, complete sequence /cds=p(66,1040) /gb=AY085424
At.36457
Arabidopsis thaliana clone RAFL15-02-N12 (R20259) putative NAM (no apical meristem) protein (At2g46770) mRNA, complete cds /cds=p(95,1192) /gb=BT002931
At.50052
Arabidopsis thaliana ANAC033; transcription factor (ANAC033) mRNA, complete cds /cds=p(295,1410) /gb=NM_106606
At.51889
Arabidopsis thaliana ANAC012/NST3/SND1 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12); specific transcriptional repressor/ transcription activator/> (ANAC012/NST3/SND1) mRNA, complete cds /cds=p(1,1077) /gb=NM_103011
At.52328
Arabidopsis thaliana VND5 (VASCULAR RELATED NAC-DOMAIN PROTEIN 5); transcription factor (VND5) mRNA, complete cds /cds=p(1,1185) /gb=NM_104947
At.55682
Arabidopsis thaliana VND6 (VASCULAR-RELATED NAC-DOMAIN 6); transcription factor (VND6) mRNA, complete cds /cds=p(1,1047) /gb=NM_125632
Hv.26059
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf176e18, mRNA sequence /gb=AK248449
Os.10581
Oryza sativa Japonica Group cDNA clone:002-148-G11, full insert sequence /gb=AK109860
Os.4386
Oryza sativa Japonica Group cDNA clone:J033087M22, full insert sequence /cds=p(1150,1809) /gb=AK102224
Os.50054
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245A08, full insert sequence /gb=CT833125
Os.51831
Oryza sativa Japonica Group cDNA clone:001-123-E07, full insert sequence /cds=p(246,1325) /gb=AK063943
Os.56173
Oryza sativa Japonica Group cDNA clone:002-124-A06, full insert sequence /cds=p(663,1241) /gb=AK109552
Pth.12425
Populus trichocarpa clone WS0117_G20 unknown mRNA /cds=p(179,1447) /gb=EF146350

Domain Architecture

NAM PF02365 GSVIVP00026159001
DomainStartEndBit scoreE-value
NAM11140296.94.4e-86

Sequences