Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00026891001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00026891001
Family
SNF2
3D structure (top 5)
2FWR 3DMQ 1Z3I 1Z5Z 1Z63
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

483746 Score: 1

Arabidopsis thaliana

AT2G46020.2 Score: 1
AT2G46020.1 Score: 0.989

Carica papaya

evm.TU.supercontig_11.28 Score: 1

Micromonas pusilla CCMP1545

60694 Score: 1

Micromonas sp. RCC299

59225 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g02290.1 Score: 1

Physcomitrella patens

160727 Score: 1

Sorghum bicolor

5003426 Score: 1

Selaginella moellendorffii

60241 Score: 1

Zea mays

GRMZM2G163849_P05 Score: 1

Expression data

Expressed Sequence Tags

At.48598
Arabidopsis thaliana ATBRM/BRM/CHR2 (ARABIDOPSIS THALIANA BRAHMA); ATP binding / DNA binding / helicase/ transcription regulator (ATBRM/BRM/CHR2) mRNA, complete cds /cds=p(1,6582) /gb=NM_201966
Os.12135
Oryza sativa (japonica cultivar-group) Os02g0114000 (Os02g0114000) mRNA, complete cds /cds=p(1,6603) /gb=NM_001052200
Ppa.17851
Physcomitrella patens subsp. patens SWI/SNF class chromatin remodeling complex protein (CHR1520) mRNA, complete cds /cds=p(1,7461) /gb=XM_001756887
Pth.13982
WS0192.B21_O16 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0192_O16 3', mRNA sequence /clone=WS0192_O16 /clone_end=3' /gb=CV230885
Vvi.13755
CAB70002_IVaR_G10 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70002_IVaR_G10 3', mRNA sequence /clone=CAB70002_IVaR_G10 /clone_end=3' /gb=CB980498

Domain Architecture

QLQ PF08880 GSVIVP00026891001
DomainStartEndBit scoreE-value
QLQ43447145.22.6e-10
SNF2_N9671256365.59.7e-107
Helicase_C1308138787.16.3e-23
Bromodomain182819181.50.0016

Sequences