Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00026895001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00026895001
Family
MYB-related
3D structure (top 5)
2CU7 1IRZ 2YUM 2IW5 2YUS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_184.25 Score: 1

Ostreococcus lucimarinus

6612 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g45670.1 Score: 1

Ostreococcus tauri

16627 Score: 1

Physcomitrella patens

24905 Score: 1
90560 Score: 1

Vitis vinifera

GSVIVP00023066001 Score: 1
GSVIVP00026895001 Score: 1

Populus trichocarpa

572303 Score: 1

Sorghum bicolor

4884458 Score: 1

Zea mays

GRMZM2G118693_P01 Score: 1

Expression data

Expressed Sequence Tags

At.20108
Arabidopsis thaliana LCL1 (LHY/CCA1-LIKE 1); DNA binding / transcription factor (LCL1) mRNA, complete cds /cds=p(91,972) /gb=NM_120362
At.29606
Arabidopsis thaliana myb family transcription factor (AT5G52660) mRNA, complete cds /cds=p(124,1119) /gb=NM_124644
At.40072
Arabidopsis thaliana unknown protein (At3g09600) mRNA, complete cds /cds=p(45,941) /gb=AY091106
At.44234
Arabidopsis thaliana myb family transcription factor (AT4G01280) mRNA, complete cds /cds=p(78,986) /gb=NM_116358
At.49839
Arabidopsis thaliana myb family transcription factor (AT1G01520) mRNA, complete cds /cds=p(1,864) /gb=NM_100034
Hv.12868
HB108C06_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone HB108C06_SK.ab1 similar to Hydrogen dehydrogenase,Hydrogenase,Cytochrome-c3 hydrogenase,Transferred entry: 1.18.99.1,, mRNA sequence /clone=HB108C06_SK.ab1 /gb=BM817014
Os.12484
Oryza sativa Japonica Group cDNA, clone: J075153L04, full insert sequence /gb=AK288059
Os.23936
Oryza sativa Japonica Group cDNA clone:002-130-F07, full insert sequence /cds=p(135,1031) /gb=AK119640
Pba.1173
WS01229.BR_N18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_N18 5', mRNA sequence /clone=WS01229_N18 /clone_end=5' /gb=DT473512
Pba.304
WS02520.BR_K06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02520_K06 5', mRNA sequence /clone=WS02520_K06 /clone_end=5' /gb=DT477671
Pba.3689
WS01918.C21_N01 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01918_N01 3', mRNA sequence /clone=WS01918_N01 /clone_end=3' /gb=DT469763
Ppa.24151
BY950024 ppls full-length cDNA library Physcomitrella patens subsp. patens cDNA clone PPLS029G16 5', mRNA sequence /clone=PPLS029G16 /clone_end=5' /gb=BY950024
Pth.1173
WS01229.BR_N18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_N18 5', mRNA sequence /clone=WS01229_N18 /clone_end=5' /gb=DT473512
Pth.16507
WS01918.C21_N01 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01918_N01 3', mRNA sequence /clone=WS01918_N01 /clone_end=3' /gb=DT469763
Pth.304
WS02520.BR_K06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02520_K06 5', mRNA sequence /clone=WS02520_K06 /clone_end=5' /gb=DT477671
Sbi.312
GABR1_43_F12.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_43_F12_A002 5', mRNA sequence /clone=GABR1_43_F12_A002 /clone_end=5' /gb=CX619150 /gi=57817937
Vvi.22687
WIN061.C21_K13 Cab Sauv seed normalized (WIN06) Vitis vinifera cDNA clone WIN061_K13 3', mRNA sequence /clone=WIN061_K13 /clone_end=3' /gb=EC957082

Domain Architecture

Myb_DNA-binding PF00249 GSVIVP00026895001
DomainStartEndBit scoreE-value
Myb_DNA-binding5710250.37.5e-12

Sequences