Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00027197001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00027197001
Family
C3H
3D structure (top 5)
2E5G 3D2W 1WF0 2CPF 2FY1
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os08g03310.6 Score: 1
LOC_Os08g03310.1 Score: 0.926
LOC_Os08g03310.2 Score: 0.926
LOC_Os08g03310.3 Score: 0.912
LOC_Os08g03310.4 Score: 0.912
LOC_Os08g03310.5 Score: 0.904

Zea mays

GRMZM2G148090_P02 Score: 1

Expression data

Expressed Sequence Tags

At.41216
Arabidopsis thaliana zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (AT2G05160) mRNA, complete cds /cds=p(1,1611) /gb=NM_126543
At.53909
Arabidopsis thaliana RNA recognition motif (RRM)-containing protein (AT3G52980) mRNA, complete cds /cds=p(1,1146) /gb=NM_115158
Vvi.12680
S1G00230 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G00230, mRNA sequence /clone=S1G00230 /gb=EE075516

Domain Architecture

zf-CCCH PF00642 GSVIVP00027197001
DomainStartEndBit scoreE-value
zf-CCCH16018525.50.00021
RRM_131237924.80.00035

Sequences