Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00027438001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00027438001
Family
CCAAT
3D structure (top 5)
1Q9C 1TZY 1F66 1ID3 2F8N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

918601 Score: 1

Arabidopsis thaliana

AT1G51060.1 Score: 1
AT4G27230.1 Score: 1
AT5G54640.1 Score: 1

Chlorella sp. NC64A

21904 Score: 1
54972 Score: 1
54989 Score: 1
27894 Score: 0.933
28450 Score: 0.933

Carica papaya

evm.TU.supercontig_97.83 Score: 1

Micromonas sp. RCC299

83469 Score: 1
88573 Score: 1

Vitis vinifera

GSVIVP00006109001 Score: 1
GSVIVP00012841001 Score: 1
GSVIVP00023622001 Score: 1
GSVIVP00027438001 Score: 1

Ostreococcus lucimarinus

8995 Score: 1
9152 Score: 1

Vitis vinifera

GSVIVP00023622001 Score: 1
GSVIVP00027438001 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g36140.1 Score: 1

Ostreococcus tauri

18690 Score: 1
24301 Score: 1
9126 Score: 1

Vitis vinifera

GSVIVP00012841001 Score: 1
GSVIVP00027438001 Score: 1

Populus trichocarpa

571462 Score: 1

Sorghum bicolor

147912 Score: 1

Zea mays

GRMZM2G151726_P03 Score: 1

Expression data

Expressed Sequence Tags

At.17184
Arabidopsis thaliana HTA10; DNA binding (HTA10) mRNA, complete cds /cds=p(73,471) /gb=NM_103984
At.2335
Arabidopsis thaliana HTA2 (HISTONE H2A); DNA binding (HTA2) mRNA, complete cds /cds=p(95,490) /gb=NM_118857
At.29485
Arabidopsis thaliana clone RAFL15-12-B09 (R20557) putative histone H2A protein (At5g54640) mRNA, complete cds /cds=p(64,456) /gb=BT004023
At.73912
AV823554 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-21-A22 5', mRNA sequence /clone=RAFL05-21-A22 /clone_end=5' /gb=AV823554
Hv.10966
HB106C06_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone HB106C06_SK.ab1 similar to (AC079828) histone H2A, putative [Arabidopsis thaliana] gi|13877851|gb|AAK44003.1|AF370188_1 (AF370188) putative histone H2A protein [Arabidopsis thaliana], mRNA ... /
Hv.3636
HWM004.C12 ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM004.C12, mRNA sequence /clone=HWM004.C12 /gb=BE420959
Mtr.4979
METAA05TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474860
Os.10168
CT859379 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCEA014A15, mRNA sequence /clone=OSIGCEA014A15 /gb=CT859379
Os.80556
FU_REN01A-1-H06.seq Rice mixture of leaf, root, panicle Oryza sativa (japonica cultivar-group) cDNA, mRNA sequence /gb=EE592042
Os.80793
CT848255 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone CONTIG628, mRNA sequence /clone=CONTIG628 /gb=CT848255
Os.88111
RECm0174 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone BI008O19, BI139F09, EI111K21, EI089I11 5', mRNA sequence /clone=BI008O19,_BI139F09,_EI111K21,_EI089I11 /clone_end=5' /gb=CX099564
Pba.11467
WS01122.BR_B11 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01122_B11 5', mRNA sequence /clone=WS01122_B11 /clone_end=5' /gb=DT495990
Pba.4034
WS01121.BR_N21 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01121_N21 5', mRNA sequence /clone=WS01121_N21 /clone_end=5' /gb=DT495916
Pth.11515
F003P52.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F003P52 3', mRNA sequence /clone=F003P52 /clone_end=3' /gb=CK090413
Pth.16974
Populus trichocarpa clone WS0116_P05 unknown mRNA /cds=p(101,505) /gb=EF146298
Pth.4034
WS01121.BR_N21 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01121_N21 5', mRNA sequence /clone=WS01121_N21 /clone_end=5' /gb=DT495916
Ptp.10323
T084D03 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU836247
Ptp.2600
T021H09 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU831472
Ptp.6730
T001D12 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU829900
Vvi.7584
WIN0213.TB24_F07 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN0213_F07 3', mRNA sequence /clone=WIN0213_F07 /clone_end=3' /gb=EC926739

Domain Architecture

NF-YC NF-YC GSVIVP00027438001
DomainStartEndBit scoreE-value
Histone1992114.34e-31
CBFD_NFYB_HMF258920.50.0023
NF-YC2810210.93.1e-07

Sequences