Gene model: GSVIVP00027438001

Species: Vitis vinifera Gene model GSVIVP00027438001 Family CCAAT 3D structure (top 5) 1ID3 2F8N 2JSS 2NQB 1Q9C
	PDB entry: 1ID3 2F8N 2JSS 2NQB 1Q9C 1TZY 1F66 1JFI 1N1J 2BYK 1F1E 1KU5 1B67

• Genoscope

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

918601 Score: 1

Arabidopsis thaliana

AT1G51060.1 Score: 1
AT4G27230.1 Score: 1
AT5G54640.1 Score: 1

Chlorella sp. NC64A

21904 Score: 1
54972 Score: 1
54989 Score: 1
27894 Score: 0.933
28450 Score: 0.933

Carica papaya

evm.TU.supercontig_97.83 Score: 1

Micromonas sp. RCC299

83469 Score: 1
88573 Score: 1

Vitis vinifera

GSVIVP00006109001 Score: 1
GSVIVP00012841001 Score: 1
GSVIVP00023622001 Score: 1
GSVIVP00027438001 Score: 1

Ostreococcus lucimarinus

8995 Score: 1
9152 Score: 1

Vitis vinifera

GSVIVP00023622001 Score: 1
GSVIVP00027438001 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g36140.1 Score: 1

Ostreococcus tauri

18690 Score: 1
24301 Score: 1
9126 Score: 1

Vitis vinifera

GSVIVP00012841001 Score: 1
GSVIVP00027438001 Score: 1

Populus trichocarpa

571462 Score: 1

Sorghum bicolor

147912 Score: 1

Zea mays

GRMZM2G151726_P03 Score: 1

• NCBI EST Profile Viewer (UniGene: At.17184)
• NCBI EST Profile Viewer (UniGene: At.2335)
• NCBI EST Profile Viewer (UniGene: At.29485)
• NCBI EST Profile Viewer (UniGene: At.73912)
• NCBI EST Profile Viewer (UniGene: Hv.10966)
• NCBI EST Profile Viewer (UniGene: Hv.3636)
• NCBI EST Profile Viewer (UniGene: Mtr.4979)
• NCBI EST Profile Viewer (UniGene: Os.10168)
• NCBI EST Profile Viewer (UniGene: Os.80556)
• NCBI EST Profile Viewer (UniGene: Os.80793)
• NCBI EST Profile Viewer (UniGene: Os.88111)
• NCBI EST Profile Viewer (UniGene: Pba.11467)
• NCBI EST Profile Viewer (UniGene: Pba.4034)
• NCBI EST Profile Viewer (UniGene: Pth.11515)
• NCBI EST Profile Viewer (UniGene: Pth.16974)
• NCBI EST Profile Viewer (UniGene: Pth.4034)
• NCBI EST Profile Viewer (UniGene: Ptp.10323)
• NCBI EST Profile Viewer (UniGene: Ptp.2600)
• NCBI EST Profile Viewer (UniGene: Ptp.6730)
• NCBI EST Profile Viewer (UniGene: Vvi.7584)

At.17184

Arabidopsis thaliana HTA10; DNA binding (HTA10) mRNA, complete cds /cds=p(73,471) /gb=NM_103984

At.2335

Arabidopsis thaliana HTA2 (HISTONE H2A); DNA binding (HTA2) mRNA, complete cds /cds=p(95,490) /gb=NM_118857

At.29485

Arabidopsis thaliana clone RAFL15-12-B09 (R20557) putative histone H2A protein (At5g54640) mRNA, complete cds /cds=p(64,456) /gb=BT004023

At.73912

AV823554 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-21-A22 5', mRNA sequence /clone=RAFL05-21-A22 /clone_end=5' /gb=AV823554

Hv.10966

HB106C06_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone HB106C06_SK.ab1 similar to (AC079828) histone H2A, putative [Arabidopsis thaliana] gi|13877851|gb|AAK44003.1|AF370188_1 (AF370188) putative histone H2A protein [Arabidopsis thaliana], mRNA ... /

Hv.3636

HWM004.C12 ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM004.C12, mRNA sequence /clone=HWM004.C12 /gb=BE420959

Mtr.4979

METAA05TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474860

Os.10168

CT859379 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCEA014A15, mRNA sequence /clone=OSIGCEA014A15 /gb=CT859379

Os.80556

FU_REN01A-1-H06.seq Rice mixture of leaf, root, panicle Oryza sativa (japonica cultivar-group) cDNA, mRNA sequence /gb=EE592042

Os.80793

CT848255 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone CONTIG628, mRNA sequence /clone=CONTIG628 /gb=CT848255

Os.88111

RECm0174 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone BI008O19, BI139F09, EI111K21, EI089I11 5', mRNA sequence /clone=BI008O19,_BI139F09,_EI111K21,_EI089I11 /clone_end=5' /gb=CX099564

Pba.11467

WS01122.BR_B11 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01122_B11 5', mRNA sequence /clone=WS01122_B11 /clone_end=5' /gb=DT495990

Pba.4034

WS01121.BR_N21 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01121_N21 5', mRNA sequence /clone=WS01121_N21 /clone_end=5' /gb=DT495916

Pth.11515

F003P52.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F003P52 3', mRNA sequence /clone=F003P52 /clone_end=3' /gb=CK090413

Pth.16974

Populus trichocarpa clone WS0116_P05 unknown mRNA /cds=p(101,505) /gb=EF146298

Pth.4034

WS01121.BR_N21 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01121_N21 5', mRNA sequence /clone=WS01121_N21 /clone_end=5' /gb=DT495916

Ptp.10323

T084D03 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU836247

Ptp.2600

T021H09 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU831472

Ptp.6730

T001D12 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU829900

Vvi.7584

WIN0213.TB24_F07 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN0213_F07 3', mRNA sequence /clone=WIN0213_F07 /clone_end=3' /gb=EC926739

protein sequence
transcript sequence