Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00027621001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00027621001
Family
NAC
3D structure (top 5)
1UT7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

478997 Score: 1

Arabidopsis thaliana

AT3G15510.1 Score: 1

Carica papaya

evm.TU.supercontig_80.96 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g48450.1 Score: 1

Physcomitrella patens

112854 Score: 1
137756 Score: 1

Populus trichocarpa

660994 Score: 1

Sorghum bicolor

4876084 Score: 1

Selaginella moellendorffii

105213 Score: 1

Zea mays

GRMZM2G179885_P02 Score: 1
GRMZM2G179885_P03 Score: 1

Expression data

Expressed Sequence Tags

At.10430
Arabidopsis thaliana At1g61110 mRNA for unknown protein, complete cds, clone: RAFL19-05-K20 /cds=p(117,1088) /gb=AK117878
At.10489
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB8ZG06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX823101
At.11024
Arabidopsis thaliana NAM (Arabidopsis NAC domain containing protein 18); transcription factor (NAM) mRNA, complete cds /cds=p(113,1075) /gb=NM_104166
At.24919
Arabidopsis thaliana unknown protein (At1g69490) mRNA, complete cds /cds=p(94,900) /gb=AF360201
At.42943
Arabidopsis thaliana mRNA for NAM-like protein, complete cds, clone: RAFL14-07-D22 /cds=p(119,1198) /gb=AK227417
Hv.1425
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf19c03, mRNA sequence /gb=AK249102
Hv.5097
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97a05, mRNA sequence /gb=AK251058
Mtr.13202
MTYEA18TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV260652
Mtr.14197
NF047H10EC1F1091 Elicited cell culture Medicago truncatula cDNA clone NF047H10EC 5', mRNA sequence /clone=NF047H10EC /clone_end=5' /gb=BF648589
Mtr.22324
EST315871 DSIR Medicago truncatula cDNA clone pDSIR-30G5, mRNA sequence /clone=pDSIR-30G5 /gb=AW560823
Mtr.4556
EST611106 KVKC Medicago truncatula cDNA clone pKVKC-7B8, mRNA sequence /clone=pKVKC-7B8 /gb=BQ165237
Os.17286
Oryza sativa Japonica Group cDNA, clone: J100075D15, full insert sequence /cds=p(172,1350) /gb=AK243514
Os.36437
Oryza sativa Japonica Group cDNA clone:001-115-A08, full insert sequence /gb=AK063406
Os.4384
Oryza sativa (japonica cultivar-group) NAC protein mRNA, complete cds /cds=p(105,1061) /gb=AY986504
Os.79631
Oryza sativa (japonica cultivar-group) Os12g0123700 (Os12g0123700) mRNA, complete cds /cds=p(1,1182) /gb=NM_001072566
Ptp.11558
UL65G05.5pR Populus cold stressed leaves cDNA library Populus tremula x Populus tremuloides cDNA clone UL65G05 5', mRNA sequence /clone=UL65G05 /clone_end=5' /gb=DN500590
Sbi.1157
RHOH1_8_B12.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_8_B12_A002 5', mRNA sequence /clone=RHOH1_8_B12_A002 /clone_end=5' /gb=CN125046 /gi=45949087
Sbi.15189
OX1_57_D06.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_57_D06_A002 5', mRNA sequence /clone=OX1_57_D06_A002 /clone_end=5' /gb=CN137491 /gi=45971143
Vvi.11422
WIN1142.C21_D20 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1142_D20 3', mRNA sequence /clone=WIN1142_D20 /clone_end=3' /gb=EC991336
Vvi.6677
WIN063.C21_K22 Cab Sauv seed normalized (WIN06) Vitis vinifera cDNA clone WIN063_K22 3', mRNA sequence /clone=WIN063_K22 /clone_end=3' /gb=EC957779

Domain Architecture

NAM PF02365 GSVIVP00027621001
DomainStartEndBit scoreE-value
NAM15143317.52.7e-92

Sequences