Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00027622001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00027622001
Family
NAC
3D structure (top 5)
1UT7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

474413 Score: 1
492058 Score: 1

Arabidopsis thaliana

AT4G27410.2 Score: 1
AT4G27410.3 Score: 0.97

Carica papaya

evm.TU.supercontig_80.95 Score: 1

Populus trichocarpa

728432 Score: 1

Selaginella moellendorffii

47266 Score: 1

Expression data

Expressed Sequence Tags

At.10430
Arabidopsis thaliana At1g61110 mRNA for unknown protein, complete cds, clone: RAFL19-05-K20 /cds=p(117,1088) /gb=AK117878
At.20412
Arabidopsis thaliana RD26 (RESPONSIVE TO DESSICATION 26); transcription factor (RD26) mRNA, complete cds /cds=p(137,1030) /gb=NM_118875
At.20460
Arabidopsis thaliana ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55); transcription factor (ATNAC3) mRNA, complete cds /cds=p(115,1068) /gb=NM_112418
At.28621
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB14ZF09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX813389
At.49213
Arabidopsis thaliana ANAC102 (Arabidopsis NAC domain containing protein 102); transcription factor (ANAC102) mRNA, complete cds /cds=p(1,939) /gb=NM_125774
Hv.1425
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf19c03, mRNA sequence /gb=AK249102
Hv.15755
Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (nac6 gene) /cds=p(160,1074) /gb=AM500854
Hv.6550
Hordeum vulgare subsp. vulgare mRNA for putative NAC transcription factor (nac4 gene) /cds=p(156,992) /gb=AM500853
Mtr.10860
Medicago truncatula clone MTYF9_FA_FB_FC1G-B-24 unknown mRNA /cds=p(140,1018) /gb=BT052284
Mtr.14197
NF047H10EC1F1091 Elicited cell culture Medicago truncatula cDNA clone NF047H10EC 5', mRNA sequence /clone=NF047H10EC /clone_end=5' /gb=BF648589
Mtr.14266
META326TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474238
Mtr.22275
EST1226545 MTY Medicago truncatula cDNA clone MTYAV46, mRNA sequence /clone=MTYAV46 /gb=DW017584
Mtr.4556
EST611106 KVKC Medicago truncatula cDNA clone pKVKC-7B8, mRNA sequence /clone=pKVKC-7B8 /gb=BQ165237
Os.26695
RECm0544 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone EI051E13, BI073B11, EI053I04, BI157H21, EI073L16, EI114F05, EI11 5', mRNA sequence /clone=EI051E13,_BI073B11,_EI053I04,_BI157H21,_EI073L16, _EI114F
Os.4384
Oryza sativa (japonica cultivar-group) NAC protein mRNA, complete cds /cds=p(105,1061) /gb=AY986504
Pth.8122
Populus trichocarpa clone WS01228_D08 unknown mRNA /cds=p(89,790) /gb=EF147142
Sbi.14555
RHOH1_43_E04.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_43_E04_A002 5', mRNA sequence /clone=RHOH1_43_E04_A002 /clone_end=5' /gb=CN130769 /gi=45959585
Sbi.15189
OX1_57_D06.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_57_D06_A002 5', mRNA sequence /clone=OX1_57_D06_A002 /clone_end=5' /gb=CN137491 /gi=45971143
Vvi.1428
EST 6612 Ripening Grape berries Lambda Zap II Library Vitis vinifera cDNA clone RT081G07 3', mRNA sequence /clone=RT081G07 /clone_end=3' /gb=BQ797674
Vvi.23623
sT7aVVM015J07024 VVM Vitis vinifera cDNA clone VVM015J07024 5' similar to emb_CAO39228.1 unnamed protein product [Vitis vinifera]. Expect = 5e-118, mRNA sequence /clone=VVM015J07024 /clone_end=5' /gb=FC066362

Domain Architecture

NAM PF02365 GSVIVP00027622001
DomainStartEndBit scoreE-value
NAM14140294.32.6e-85

Sequences