Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00028515001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00028515001
Family
SET
3D structure (top 5)
2R3A 3F9X 2RFI 1ML9 3H6L
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

494600 Score: 1

Arabidopsis thaliana

AT1G04050.1 Score: 1

Carica papaya

evm.TU.supercontig_87.14 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g40770.1 Score: 1
LOC_Os02g40770.2 Score: 1

Populus trichocarpa

241475 Score: 1

Zea mays

GRMZM2G016901_P01 Score: 1
GRMZM2G061709_P01 Score: 1
GRMZM2G138115_P01 Score: 1

Vitis vinifera

GSVIVP00020336001 Score: 1
GSVIVP00028515001 Score: 1

Expression data

Expressed Sequence Tags

At.10585
Arabidopsis thaliana SUVR1 (Arabidopsis homolog of SU(VAR)3-9 1); histone-lysine N-methyltransferase/ zinc ion binding (SUVR1) mRNA, complete cds /cds=p(102,2306) /gb=NM_100286
At.26569
Arabidopsis thaliana mRNA for SET domain protein SUVR2, complete cds, clone: RAFL26-05-B10 /cds=p(244,2397) /gb=AK230468
Os.53850
Oryza sativa Japonica Group cDNA clone:J023086A12, full insert sequence /cds=p(195,2420) /gb=AK100391
Ppa.19113
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_3159) mRNA, partial cds /cds=p(1,966) /gb=XM_001785757
Vvi.20659
WIN0534.C21_N01 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0534_N01 3', mRNA sequence /clone=WIN0534_N01 /clone_end=3' /gb=EC945442

Domain Architecture

WIYLD PF10440 GSVIVP00028515001
DomainStartEndBit scoreE-value
WIYLD1611052.5e-28
Pre-SET27842613.43.3e-05
SET428570139.78.8e-39

Sequences